Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHQ25_RS03105 Genome accession   NZ_CP148254
Coordinates   597219..597992 (+) Length   257 a.a.
NCBI ID   WP_002867721.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 592219..602992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ25_RS03090 (WHQ25_03090) - 593068..595002 (-) 1935 WP_002867720.1 ribonuclease R family protein -
  WHQ25_RS03095 (WHQ25_03095) ilvC 595121..596143 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHQ25_RS03100 (WHQ25_03100) - 596147..597229 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  WHQ25_RS03105 (WHQ25_03105) dprA 597219..597992 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  WHQ25_RS03110 (WHQ25_03110) dprB 597989..598372 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHQ25_RS03115 (WHQ25_03115) - 598401..599240 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ25_RS03120 (WHQ25_03120) msrA 599419..599916 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ25_RS03125 (WHQ25_03125) ppa 599958..600476 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ25_RS03130 (WHQ25_03130) adk 600486..601064 (-) 579 WP_002859580.1 adenylate kinase -
  WHQ25_RS03135 (WHQ25_03135) aspS 601061..602812 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28878.64 Da        Isoelectric Point: 6.4874

>NTDB_id=869028 WHQ25_RS03105 WP_002867721.1 597219..597992(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0004]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
TKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=869028 WHQ25_RS03105 WP_002867721.1 597219..597992(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0004]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
ACAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455