Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP53_RS02470 Genome accession   NZ_CP148242
Coordinates   477425..477976 (-) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 472425..482976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP53_RS02440 (WHP53_02440) ctsT 472474..472776 (-) 303 WP_002877750.1 hypothetical protein Machinery gene
  WHP53_RS02445 (WHP53_02445) proC 472773..473504 (-) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP53_RS02450 (WHP53_02450) fliW 473504..473893 (-) 390 WP_002877749.1 flagellar assembly protein FliW -
  WHP53_RS02455 (WHP53_02455) - 474054..474701 (+) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  WHP53_RS02460 (WHP53_02460) lon 474718..477093 (+) 2376 WP_002868636.1 endopeptidase La -
  WHP53_RS02465 (WHP53_02465) rpsR 477154..477414 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP53_RS02470 (WHP53_02470) ssb 477425..477976 (-) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  WHP53_RS02475 (WHP53_02475) rpsF 477985..478362 (-) 378 WP_002812868.1 30S ribosomal protein S6 -
  WHP53_RS02480 (WHP53_02480) - 478449..479314 (-) 866 Protein_489 VirK family antimicrobial peptide resistance protein -
  WHP53_RS02485 (WHP53_02485) rseP 479307..480413 (-) 1107 WP_002877745.1 RIP metalloprotease RseP -
  WHP53_RS02490 (WHP53_02490) pgsA 480410..480946 (-) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP53_RS02495 (WHP53_02495) rdxA 481071..481676 (-) 606 WP_002877740.1 NAD(P)H-dependent oxidoreductase -
  WHP53_RS02500 (WHP53_02500) - 481676..482285 (-) 610 Protein_493 nitroreductase family protein -
  WHP53_RS02505 (WHP53_02505) - 482349..482774 (-) 426 WP_002859154.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=868856 WHP53_RS02470 WP_002877747.1 477425..477976(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0010]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=868856 WHP53_RS02470 WP_002877747.1 477425..477976(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0010]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372