Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM07_RS00040 Genome accession   NZ_CP132379
Coordinates   9252..9761 (+) Length   169 a.a.
NCBI ID   WP_038520442.1    Uniprot ID   A0A0F4M5U6
Organism   Lactobacillus helsingborgensis strain K-FP18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4252..14761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM07_RS00030 (RAM07_00030) gyrA 6215..8698 (+) 2484 WP_306269025.1 DNA gyrase subunit A -
  RAM07_RS00035 (RAM07_00035) rpsF 8904..9197 (+) 294 WP_034978626.1 30S ribosomal protein S6 -
  RAM07_RS00040 (RAM07_00040) ssb 9252..9761 (+) 510 WP_038520442.1 single-stranded DNA-binding protein Machinery gene
  RAM07_RS00045 (RAM07_00045) rpsR 9784..10023 (+) 240 WP_038520445.1 30S ribosomal protein S18 -
  RAM07_RS00050 (RAM07_00050) - 10309..12330 (+) 2022 WP_306269029.1 DHH family phosphoesterase -
  RAM07_RS00055 (RAM07_00055) rplI 12343..12798 (+) 456 WP_038520452.1 50S ribosomal protein L9 -
  RAM07_RS00060 (RAM07_00060) dnaB 12835..14214 (+) 1380 WP_038520455.1 replicative DNA helicase -
  RAM07_RS00065 (RAM07_00065) - 14384..14542 (+) 159 WP_109585634.1 CsbD family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18603.26 Da        Isoelectric Point: 4.6034

>NTDB_id=868844 RAM07_RS00040 WP_038520442.1 9252..9761(+) (ssb) [Lactobacillus helsingborgensis strain K-FP18]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
NYDNKDGQRVYVTEVIVDNFSLLESRKDREARGQNGGYTPNNNGNYGNQNTNNNPNMGTPNQNNGLDNTQDPFAGSGDTI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=868844 RAM07_RS00040 WP_038520442.1 9252..9761(+) (ssb) [Lactobacillus helsingborgensis strain K-FP18]
ATGATTAATCGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCCGTCGATCGTCAATATACTAACGCTCAAGGTGAGAGAGGTGCAGATTTTATCAGTTGTGTCATTT
GGCGCAAAGCAGCAGAAAATTTCTGTAATTTTACGTCTAAAGGTTCACTTGTTGGTATTGATGGCCGAATTCAAACCAGA
AACTACGATAATAAAGACGGGCAAAGAGTATATGTAACGGAAGTTATTGTTGATAATTTCTCATTGCTTGAATCACGTAA
AGATCGTGAGGCCCGTGGTCAAAATGGTGGTTACACACCAAATAATAATGGTAATTATGGTAATCAAAATACCAATAACA
ACCCTAATATGGGTACGCCAAACCAGAACAATGGCCTAGATAATACGCAGGATCCATTTGCCGGTTCAGGCGATACCATT
GATATTTCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F4M5U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.584

100

0.651
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.55