Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM13_RS00040 Genome accession   NZ_CP132378
Coordinates   9264..9785 (+) Length   173 a.a.
NCBI ID   WP_046305696.1    Uniprot ID   A0A3M0NPG9
Organism   Lactobacillus apis strain K-MP7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4264..14785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM13_RS00030 (RAM13_00030) gyrA 6222..8717 (+) 2496 WP_306266221.1 DNA gyrase subunit A -
  RAM13_RS00035 (RAM13_00035) rpsF 8918..9211 (+) 294 WP_046305694.1 30S ribosomal protein S6 -
  RAM13_RS00040 (RAM13_00040) ssb 9264..9785 (+) 522 WP_046305696.1 single-stranded DNA-binding protein Machinery gene
  RAM13_RS00045 (RAM13_00045) rpsR 9808..10047 (+) 240 WP_046305698.1 30S ribosomal protein S18 -
  RAM13_RS00050 (RAM13_00050) - 10396..11112 (+) 717 WP_306266228.1 GntR family transcriptional regulator -
  RAM13_RS00055 (RAM13_00055) - 11321..12289 (+) 969 WP_306266230.1 SIS domain-containing protein -
  RAM13_RS00060 (RAM13_00060) - 12461..12946 (+) 486 WP_306266232.1 PTS sugar transporter subunit IIB -
  RAM13_RS00065 (RAM13_00065) - 12958..13746 (+) 789 WP_198183602.1 PTS sugar transporter subunit IIC -
  RAM13_RS00070 (RAM13_00070) - 13730..14551 (+) 822 WP_052726706.1 PTS system mannose/fructose/sorbose family transporter subunit IID -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18886.65 Da        Isoelectric Point: 4.5034

>NTDB_id=868825 RAM13_RS00040 WP_046305696.1 9264..9785(+) (ssb) [Lactobacillus apis strain K-MP7]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGFAPTDNGNFGNPNTNNPQNMGTSNQNNPVGNQPDSMQDPFAGS
GDTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=868825 RAM13_RS00040 WP_046305696.1 9264..9785(+) (ssb) [Lactobacillus apis strain K-MP7]
ATGATTAATCGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCCGTTGATCGTCAATATACTAACGCTCAAGGTGAGAGAGGTGCGGATTTTATCAGCTGTGTCATTT
GGAGAAAATCAGCAGAAAACTTCTGCAATTTTACATCTAAAGGTTCACTTGTTGGTATTGATGGCCGAATTCAAACCAGA
AGTTACGATAATAAAGATGGGCAAAGAGTATATGTAACAGAAGTTGTCGTAGACAACTTTGCATTGCTTGAATCACGCAA
AGATCGTGAAGCCCGTGGTCAAAATGGTGGATTTGCACCAACTGACAACGGAAACTTTGGTAATCCAAATACCAATAATC
CGCAAAATATGGGAACATCTAATCAGAACAACCCAGTAGGTAATCAACCAGATTCTATGCAGGATCCGTTTGCTGGTTCG
GGTGATACAATTGATATCTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M0NPG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.712

100

0.642
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.448

100

0.538