Detailed information NTG0868801

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RAM00_RS09230
• Genome accession: NZ_CP132376
• Coordinates: 2115769..2117253 (-)
• Length: 494 a.a.
• NCBI ID: WP_080690460.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain K-FP26
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2110769..2122253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM00_RS09215 (RAM00_09210)	amgK	2112885..2113889 (+)	1005	WP_110414459.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
RAM00_RS09220 (RAM00_09215)	-	2113960..2114937 (-)	978	WP_306175958.1	hypothetical protein	-
RAM00_RS09225 (RAM00_09220)	-	2115008..2115769 (-)	762	WP_306175959.1	class I SAM-dependent methyltransferase	-
RAM00_RS09230 (RAM00_09225)	pilR	2115769..2117253 (-)	1485	WP_080690460.1	sigma-54 dependent transcriptional regulator	Regulator
RAM00_RS09235 (RAM00_09230)	-	2117246..2118820 (-)	1575	WP_025331230.1	nitrogen regulation protein NR(II)	-
RAM00_RS09240 (RAM00_09235)	parC	2118827..2121145 (-)	2319	WP_198210830.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55559.33 Da
• Isoelectric Point: 5.1258

>NTDB_id=868801 RAM00_RS09230 WP_080690460.1 2115769..2117253(-) (pilR) [Snodgrassella alvi strain K-FP26]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=868801 RAM00_RS09230 WP_080690460.1 2115769..2117253(-) (pilR) [Snodgrassella alvi strain K-FP26]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.134	98.178	0.502
pilR	Acinetobacter baumannii strain A118	41.889	98.583	0.413