Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RAM00_RS03370 Genome accession   NZ_CP132376
Coordinates   797287..798093 (-) Length   268 a.a.
NCBI ID   WP_037391728.1    Uniprot ID   -
Organism   Snodgrassella alvi strain K-FP26     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 792287..803093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM00_RS03350 (RAM00_03345) - 793314..793712 (+) 399 WP_037391781.1 DUF350 domain-containing protein -
  RAM00_RS03355 (RAM00_03350) - 793744..794787 (+) 1044 WP_084551306.1 SPFH domain-containing protein -
  RAM00_RS03360 (RAM00_03355) - 794796..796634 (+) 1839 WP_306176288.1 DUF4178 domain-containing protein -
  RAM00_RS03365 (RAM00_03360) speD 796622..796999 (+) 378 WP_100125117.1 adenosylmethionine decarboxylase -
  RAM00_RS03370 (RAM00_03365) comL 797287..798093 (-) 807 WP_037391728.1 outer membrane protein assembly factor BamD Machinery gene
  RAM00_RS03375 (RAM00_03370) rluD 798092..799222 (+) 1131 WP_306176289.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RAM00_RS03380 (RAM00_03375) pgeF 799232..800023 (+) 792 WP_084551316.1 peptidoglycan editing factor PgeF -
  RAM00_RS03385 (RAM00_03380) - 800344..800871 (+) 528 WP_306176290.1 DUF6882 domain-containing protein -
  RAM00_RS03390 (RAM00_03385) - 801273..802004 (+) 732 WP_306176291.1 beta-ketoacyl synthase chain length factor -
  RAM00_RS03395 (RAM00_03390) - 802046..802771 (+) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RAM00_RS03400 (RAM00_03395) - 802775..803032 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30990.95 Da        Isoelectric Point: 6.6493

>NTDB_id=868788 RAM00_RS03370 WP_037391728.1 797287..798093(-) (comL) [Snodgrassella alvi strain K-FP26]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALVAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=868788 RAM00_RS03370 WP_037391728.1 797287..798093(-) (comL) [Snodgrassella alvi strain K-FP26]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAAAACGATAAGGCACTGGTTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCATGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGACACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

66.667

99.627

0.664
  comL Neisseria gonorrhoeae MS11

66.292

99.627

0.66