Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RAM05_RS03645 Genome accession   NZ_CP132375
Coordinates   837999..838805 (-) Length   268 a.a.
NCBI ID   WP_038648650.1    Uniprot ID   -
Organism   Snodgrassella alvi strain wkB9     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832999..843805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM05_RS03625 (RAM05_03625) - 834026..834424 (+) 399 WP_025330045.1 DUF350 domain-containing protein -
  RAM05_RS03630 (RAM05_03630) - 834457..835500 (+) 1044 WP_080690425.1 SPFH domain-containing protein -
  RAM05_RS03635 (RAM05_03635) - 835509..837347 (+) 1839 WP_025330047.1 DUF4178 domain-containing protein -
  RAM05_RS03640 (RAM05_03640) speD 837335..837712 (+) 378 WP_025330048.1 adenosylmethionine decarboxylase -
  RAM05_RS03645 (RAM05_03645) comL 837999..838805 (-) 807 WP_038648650.1 outer membrane protein assembly factor BamD Machinery gene
  RAM05_RS03650 (RAM05_03650) rluD 838804..839934 (+) 1131 WP_025330050.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RAM05_RS03655 (RAM05_03655) pgeF 839944..840735 (+) 792 WP_025330051.1 peptidoglycan editing factor PgeF -
  RAM05_RS03660 (RAM05_03660) - 841056..841583 (+) 528 WP_025330052.1 DUF6882 domain-containing protein -
  RAM05_RS03665 (RAM05_03665) - 841986..842717 (+) 732 WP_025330053.1 beta-ketoacyl synthase chain length factor -
  RAM05_RS03670 (RAM05_03670) - 842759..843484 (+) 726 WP_051506541.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RAM05_RS03675 (RAM05_03675) - 843488..843745 (+) 258 WP_025330055.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30962.90 Da        Isoelectric Point: 6.6493

>NTDB_id=868764 RAM05_RS03645 WP_038648650.1 837999..838805(-) (comL) [Snodgrassella alvi strain wkB9]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=868764 RAM05_RS03645 WP_038648650.1 837999..838805(-) (comL) [Snodgrassella alvi strain wkB9]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGATAAGGCACTGGCAGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

67.041

99.627

0.668
  comL Neisseria gonorrhoeae MS11

66.667

99.627

0.664