Detailed information NTG0868753

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RAM23_RS09815
• Genome accession: NZ_CP132374
• Coordinates: 2197642..2199126 (-)
• Length: 494 a.a.
• NCBI ID: WP_078475690.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain wkB339
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2192642..2204126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM23_RS09800 (RAM23_09795)	amgK	2194759..2195763 (+)	1005	WP_078475688.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
RAM23_RS09805 (RAM23_09800)	-	2195834..2196811 (-)	978	WP_100125810.1	hypothetical protein	-
RAM23_RS09810 (RAM23_09805)	-	2196881..2197642 (-)	762	WP_100125809.1	class I SAM-dependent methyltransferase	-
RAM23_RS09815 (RAM23_09810)	pilR	2197642..2199126 (-)	1485	WP_078475690.1	sigma-54 dependent transcriptional regulator	Regulator
RAM23_RS09820 (RAM23_09815)	-	2199119..2200693 (-)	1575	WP_084565508.1	ATP-binding protein	-
RAM23_RS09825 (RAM23_09820)	parC	2200700..2203018 (-)	2319	WP_100125808.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55525.29 Da
• Isoelectric Point: 5.1258

>NTDB_id=868753 RAM23_RS09815 WP_078475690.1 2197642..2199126(-) (pilR) [Snodgrassella alvi strain wkB339]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDASAIV
NEQQIRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=868753 RAM23_RS09815 WP_078475690.1 2197642..2199126(-) (pilR) [Snodgrassella alvi strain wkB339]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCACTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATCACTGCTCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTTGA
TTACTTACAAAAACCTATTACTCTGGCACAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATGCTTCCGCAATAGTT
AACGAACAGCAGATACGAGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.134	98.178	0.502
pilR	Acinetobacter baumannii strain A118	41.02	99.19	0.407