Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RAM23_RS03440 Genome accession   NZ_CP132374
Coordinates   803035..803841 (-) Length   268 a.a.
NCBI ID   WP_038648650.1    Uniprot ID   -
Organism   Snodgrassella alvi strain wkB339     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798035..808841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM23_RS03420 (RAM23_03415) - 799061..799459 (+) 399 WP_100125115.1 DUF350 domain-containing protein -
  RAM23_RS03425 (RAM23_03420) - 799492..800535 (+) 1044 WP_370520361.1 SPFH domain-containing protein -
  RAM23_RS03430 (RAM23_03425) - 800544..802382 (+) 1839 WP_100125116.1 DUF4178 domain-containing protein -
  RAM23_RS03435 (RAM23_03430) speD 802370..802747 (+) 378 WP_100125117.1 adenosylmethionine decarboxylase -
  RAM23_RS03440 (RAM23_03435) comL 803035..803841 (-) 807 WP_038648650.1 outer membrane protein assembly factor BamD Machinery gene
  RAM23_RS03445 (RAM23_03440) rluD 803840..804970 (+) 1131 WP_084551314.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RAM23_RS03450 (RAM23_03445) pgeF 804980..805771 (+) 792 WP_100125118.1 peptidoglycan editing factor PgeF -
  RAM23_RS03455 (RAM23_03450) - 806092..806619 (+) 528 WP_078474806.1 DUF6882 domain-containing protein -
  RAM23_RS03460 (RAM23_03455) - 807021..807752 (+) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  RAM23_RS03465 (RAM23_03460) - 807794..808519 (+) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RAM23_RS03470 (RAM23_03465) - 808523..808780 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30962.90 Da        Isoelectric Point: 6.6493

>NTDB_id=868738 RAM23_RS03440 WP_038648650.1 803035..803841(-) (comL) [Snodgrassella alvi strain wkB339]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=868738 RAM23_RS03440 WP_038648650.1 803035..803841(-) (comL) [Snodgrassella alvi strain wkB339]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGATAAGGCACTGGCTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCATGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATAATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGACACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

67.041

99.627

0.668
  comL Neisseria gonorrhoeae MS11

66.667

99.627

0.664