Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RAM33_RS05515 Genome accession   NZ_CP132372
Coordinates   1085353..1085922 (+) Length   189 a.a.
NCBI ID   WP_058144526.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080353..1090922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM33_RS05480 (RAM33_05470) - 1081567..1081839 (-) 273 WP_001797239.1 lactococcin 972 family bacteriocin -
  RAM33_RS05485 (RAM33_05475) - 1081849..1081950 (-) 102 WP_001792055.1 hypothetical protein -
  RAM33_RS13850 - 1082489..1082566 (-) 78 WP_099112139.1 putative holin-like toxin -
  RAM33_RS05495 (RAM33_05485) - 1082866..1083468 (-) 603 WP_001033865.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RAM33_RS05500 (RAM33_05490) - 1083483..1083659 (-) 177 WP_000214898.1 YkvS family protein -
  RAM33_RS05505 (RAM33_05495) - 1083858..1084844 (+) 987 WP_000668818.1 lipoate--protein ligase -
  RAM33_RS05510 (RAM33_05500) - 1084925..1085143 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  RAM33_RS05515 (RAM33_05505) comK/comK1 1085353..1085922 (+) 570 WP_058144526.1 competence protein ComK Regulator
  RAM33_RS05530 (RAM33_05520) - 1086409..1087920 (-) 1512 WP_000414165.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  RAM33_RS05535 (RAM33_05525) - 1088059..1089417 (-) 1359 WP_000021865.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22649.91 Da        Isoelectric Point: 9.6943

>NTDB_id=868709 RAM33_RS05515 WP_058144526.1 1085353..1085922(+) (comK/comK1) [Staphylococcus aureus strain UNC_SA3]
MYSQNIYVIRKGDMVIRPAFDDDYQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=868709 RAM33_RS05515 WP_058144526.1 1085353..1085922(+) (comK/comK1) [Staphylococcus aureus strain UNC_SA3]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACTATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995