Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K6K01_RS13175 Genome accession   NZ_AP024622
Coordinates   2531819..2532154 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain BEST3096     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2526819..2537154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K01_RS13155 (BsBEST3096_25160) gcvT 2527411..2528499 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  K6K01_RS13160 (BsBEST3096_25170) hepAA 2528941..2530614 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  K6K01_RS13165 (BsBEST3096_25180) yqhG 2530635..2531429 (+) 795 WP_003230200.1 YqhG family protein -
  K6K01_RS13170 (BsBEST3096_25190) sinI 2531612..2531785 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  K6K01_RS13175 (BsBEST3096_25200) sinR 2531819..2532154 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  K6K01_RS13180 (BsBEST3096_25210) tasA 2532247..2533032 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  K6K01_RS13185 (BsBEST3096_25220) sipW 2533096..2533668 (-) 573 WP_003246088.1 signal peptidase I SipW -
  K6K01_RS13190 (BsBEST3096_25230) tapA 2533652..2534413 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  K6K01_RS13195 (BsBEST3096_25240) yqzG 2534685..2535011 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  K6K01_RS13200 (BsBEST3096_25250) spoIITA 2535053..2535232 (-) 180 WP_003230176.1 YqzE family protein -
  K6K01_RS13205 (BsBEST3096_25260) comGG 2535303..2535677 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  K6K01_RS13210 (BsBEST3096_25270) comGF 2535678..2536061 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  K6K01_RS13215 (BsBEST3096_25280) comGE 2536087..2536434 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  K6K01_RS13220 (BsBEST3096_25290) comGD 2536418..2536849 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  K6K01_RS13225 (BsBEST3096_25300) comGC 2536839..2537135 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=86863 K6K01_RS13175 WP_003226345.1 2531819..2532154(+) (sinR) [Bacillus subtilis strain BEST3096]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=86863 K6K01_RS13175 WP_003226345.1 2531819..2532154(+) (sinR) [Bacillus subtilis strain BEST3096]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment