Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RAM29_RS04675 Genome accession   NZ_CP132367
Coordinates   950063..951049 (-) Length   328 a.a.
NCBI ID   WP_259378081.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA48     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 945063..956049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM29_RS04650 (RAM29_04650) - 945323..945670 (-) 348 WP_001242103.1 hypothetical protein -
  RAM29_RS04655 (RAM29_04655) - 945856..946449 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  RAM29_RS04660 (RAM29_04660) - 946553..946918 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  RAM29_RS04665 (RAM29_04665) yjbH 946941..947747 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RAM29_RS04670 (RAM29_04670) pepF 948207..950015 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RAM29_RS04675 (RAM29_04675) coiA 950063..951049 (-) 987 WP_259378081.1 competence protein CoiA Machinery gene
  RAM29_RS04680 (RAM29_04680) mecA 951170..951889 (-) 720 WP_306181748.1 adaptor protein MecA -
  RAM29_RS04685 (RAM29_04685) spxA 952260..952655 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RAM29_RS04690 (RAM29_04690) trpS 952949..953938 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RAM29_RS04695 (RAM29_04695) opp4C 953980..954861 (-) 882 WP_001180279.1 oligopeptide ABC transporter permease -
  RAM29_RS04700 (RAM29_04700) opp4B 954873..955835 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38894.59 Da        Isoelectric Point: 9.5714

>NTDB_id=868582 RAM29_RS04675 WP_259378081.1 950063..951049(-) (coiA) [Staphylococcus aureus strain UNC_SA48]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHLIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=868582 RAM29_RS04675 WP_259378081.1 950063..951049(-) (coiA) [Staphylococcus aureus strain UNC_SA48]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCTAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973