Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RAM34_RS04960 Genome accession   NZ_CP132365
Coordinates   1036835..1037281 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA54     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031835..1042281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM34_RS04930 (RAM34_04925) gcvPA 1032761..1034107 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RAM34_RS04935 (RAM34_04930) gcvT 1034127..1035218 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RAM34_RS04940 (RAM34_04935) - 1035377..1035901 (-) 525 WP_001015120.1 shikimate kinase -
  RAM34_RS04945 (RAM34_04940) - 1035891..1036037 (-) 147 WP_001792109.1 hypothetical protein -
  RAM34_RS04950 (RAM34_04945) comGF 1036134..1036631 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  RAM34_RS04955 (RAM34_04950) comGE 1036549..1036848 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  RAM34_RS04960 (RAM34_04955) comGD 1036835..1037281 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RAM34_RS04965 (RAM34_04960) comGC 1037259..1037570 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RAM34_RS04970 (RAM34_04965) comGB 1037584..1038654 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  RAM34_RS04975 (RAM34_04970) comGA 1038626..1039600 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RAM34_RS04980 (RAM34_04975) - 1039652..1040275 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RAM34_RS04985 (RAM34_04980) - 1040272..1040601 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RAM34_RS04990 (RAM34_04985) - 1040601..1041587 (-) 987 WP_000161311.1 ROK family glucokinase -
  RAM34_RS04995 (RAM34_04990) - 1041584..1041787 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=868533 RAM34_RS04960 WP_001788899.1 1036835..1037281(-) (comGD) [Staphylococcus aureus strain UNC_SA54]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=868533 RAM34_RS04960 WP_001788899.1 1036835..1037281(-) (comGD) [Staphylococcus aureus strain UNC_SA54]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1