Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   WHQ20_RS06110 Genome accession   NZ_CP148231
Coordinates   1164005..1165345 (-) Length   446 a.a.
NCBI ID   WP_002898507.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159005..1170345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ20_RS06085 (WHQ20_06085) - 1159142..1159912 (+) 771 WP_038814231.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  WHQ20_RS06090 (WHQ20_06090) metE 1159924..1162188 (+) 2265 WP_002898510.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  WHQ20_RS06095 (WHQ20_06095) metF 1162198..1163046 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  WHQ20_RS06100 (WHQ20_06100) - 1163068..1163259 (-) 192 WP_002852856.1 membrane protein -
  WHQ20_RS06105 (WHQ20_06105) atpB 1163256..1163936 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  WHQ20_RS06110 (WHQ20_06110) radA/sms 1164005..1165345 (-) 1341 WP_002898507.1 DNA repair protein RadA Machinery gene
  WHQ20_RS06115 (WHQ20_06115) pilA 1165345..1166211 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  WHQ20_RS06120 (WHQ20_06120) - 1166211..1166768 (-) 558 WP_002898505.1 TlpA disulfide reductase family protein -
  WHQ20_RS06125 (WHQ20_06125) - 1166851..1167477 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  WHQ20_RS06130 (WHQ20_06130) rny 1167398..1168951 (+) 1554 WP_002867373.1 ribonuclease Y -
  WHQ20_RS06135 (WHQ20_06135) - 1168960..1169517 (+) 558 WP_002856055.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49067.00 Da        Isoelectric Point: 7.2439

>NTDB_id=868531 WHQ20_RS06110 WP_002898507.1 1164005..1165345(-) (radA/sms) [Campylobacter jejuni strain Z1323CCJ0029]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAERIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=868531 WHQ20_RS06110 WP_002898507.1 1164005..1165345(-) (radA/sms) [Campylobacter jejuni strain Z1323CCJ0029]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCCTGTGGAAATCAACAAAGTAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCGGATTAAAGTTTTAAAAGAGCTTGCACAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGTGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTAAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTATTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCCAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.356

97.534

0.462
  radA Streptococcus pneumoniae Rx1

45.682

98.655

0.451
  radA Streptococcus pneumoniae D39

45.682

98.655

0.451
  radA Streptococcus pneumoniae R6

45.682

98.655

0.451
  radA Streptococcus pneumoniae TIGR4

45.682

98.655

0.451
  radA Streptococcus mitis NCTC 12261

45.662

98.206

0.448
  radA Streptococcus mitis SK321

45.662

98.206

0.448