Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHQ20_RS05195 Genome accession   NZ_CP148231
Coordinates   1001751..1002299 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 996751..1007299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ20_RS05160 (WHQ20_05160) - 996940..997366 (+) 427 Protein_994 GNAT family N-acetyltransferase -
  WHQ20_RS05165 (WHQ20_05165) - 997430..998050 (+) 621 WP_002899480.1 NAD(P)H-dependent oxidoreductase -
  WHQ20_RS05170 (WHQ20_05170) - 998050..998655 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHQ20_RS05175 (WHQ20_05175) pgsA 998780..999316 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHQ20_RS05180 (WHQ20_05180) rseP 999313..1000419 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHQ20_RS05185 (WHQ20_05185) - 1000412..1001278 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHQ20_RS05190 (WHQ20_05190) rpsF 1001365..1001739 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  WHQ20_RS05195 (WHQ20_05195) ssb 1001751..1002299 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  WHQ20_RS05200 (WHQ20_05200) rpsR 1002310..1002570 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHQ20_RS05205 (WHQ20_05205) lon 1002630..1005005 (-) 2376 WP_002853487.1 endopeptidase La -
  WHQ20_RS05210 (WHQ20_05210) - 1005022..1005669 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHQ20_RS05215 (WHQ20_05215) fliW 1005830..1006219 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHQ20_RS05220 (WHQ20_05220) proC 1006219..1006950 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  WHQ20_RS05225 (WHQ20_05225) ctsT 1006947..1007249 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=868522 WHQ20_RS05195 WP_002890071.1 1001751..1002299(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0029]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=868522 WHQ20_RS05195 WP_002890071.1 1001751..1002299(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0029]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363