Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RAM28_RS11720 Genome accession   NZ_CP132362
Coordinates   2349815..2350801 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus strain UNC_SA55     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2344815..2355801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM28_RS11695 (RAM28_11680) - 2345075..2345422 (-) 348 WP_001242103.1 hypothetical protein -
  RAM28_RS11700 (RAM28_11685) - 2345608..2346201 (+) 594 WP_049316444.1 CYTH domain-containing protein -
  RAM28_RS11705 (RAM28_11690) - 2346305..2346670 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  RAM28_RS11710 (RAM28_11695) yjbH 2346693..2347499 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RAM28_RS11715 (RAM28_11700) pepF 2347959..2349767 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RAM28_RS11720 (RAM28_11705) coiA 2349815..2350801 (-) 987 WP_000959282.1 competence protein CoiA Machinery gene
  RAM28_RS11725 (RAM28_11710) mecA 2350922..2351641 (-) 720 WP_001217728.1 adaptor protein MecA -
  RAM28_RS11730 (RAM28_11715) spxA 2352012..2352407 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RAM28_RS11735 (RAM28_11720) trpS 2352701..2353690 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RAM28_RS11740 (RAM28_11725) opp4C 2353732..2354613 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  RAM28_RS11745 (RAM28_11730) opp4B 2354625..2355587 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=868508 RAM28_RS11720 WP_000959282.1 2349815..2350801(-) (coiA) [Staphylococcus aureus strain UNC_SA55]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=868508 RAM28_RS11720 WP_000959282.1 2349815..2350801(-) (coiA) [Staphylococcus aureus strain UNC_SA55]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976