Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RAM32_RS08720 Genome accession   NZ_CP132361
Coordinates   1747428..1748414 (+) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742428..1753414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM32_RS08695 (RAM32_08690) opp4B 1742641..1743603 (+) 963 WP_153157896.1 oligopeptide ABC transporter permease -
  RAM32_RS08700 (RAM32_08695) opp4C 1743615..1744496 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  RAM32_RS08705 (RAM32_08700) trpS 1744538..1745527 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RAM32_RS08710 (RAM32_08705) spxA 1745822..1746217 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  RAM32_RS08715 (RAM32_08710) mecA 1746588..1747307 (+) 720 WP_001217728.1 adaptor protein MecA -
  RAM32_RS08720 (RAM32_08715) coiA 1747428..1748414 (+) 987 WP_000959284.1 competence protein CoiA Machinery gene
  RAM32_RS08725 (RAM32_08720) pepF 1748462..1750270 (+) 1809 WP_000082728.1 oligoendopeptidase F -
  RAM32_RS08730 (RAM32_08725) yjbH 1750731..1751537 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  RAM32_RS08735 (RAM32_08730) - 1751560..1751925 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  RAM32_RS08740 (RAM32_08735) - 1752029..1752622 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  RAM32_RS08745 (RAM32_08740) - 1752808..1753155 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=868446 RAM32_RS08720 WP_000959284.1 1747428..1748414(+) (coiA) [Staphylococcus aureus strain UNC_SA56]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=868446 RAM32_RS08720 WP_000959284.1 1747428..1748414(+) (coiA) [Staphylococcus aureus strain UNC_SA56]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982