Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WHP32_RS05910 Genome accession   NZ_CP148227
Coordinates   1138357..1139223 (-) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1133357..1144223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS05890 (WHP32_05890) metF 1135210..1136058 (+) 849 WP_032583074.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  WHP32_RS05895 (WHP32_05895) - 1136080..1136271 (-) 192 WP_002914249.1 membrane protein -
  WHP32_RS05900 (WHP32_05900) atpB 1136268..1136948 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  WHP32_RS05905 (WHP32_05905) radA 1137017..1138357 (-) 1341 WP_002852872.1 DNA repair protein RadA Machinery gene
  WHP32_RS05910 (WHP32_05910) pilA 1138357..1139223 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  WHP32_RS05915 (WHP32_05915) - 1139223..1139780 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  WHP32_RS05920 (WHP32_05920) - 1139863..1140489 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  WHP32_RS05925 (WHP32_05925) rny 1140410..1141963 (+) 1554 WP_002858133.1 ribonuclease Y -
  WHP32_RS05930 (WHP32_05930) - 1141972..1142529 (+) 558 WP_002856055.1 DedA family protein -
  WHP32_RS05935 (WHP32_05935) - 1142529..1143788 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=868438 WHP32_RS05910 WP_002858085.1 1138357..1139223(-) (pilA) [Campylobacter jejuni strain Z1323CCJ0040]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=868438 WHP32_RS05910 WP_002858085.1 1138357..1139223(-) (pilA) [Campylobacter jejuni strain Z1323CCJ0040]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437