Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WHP32_RS05905 Genome accession   NZ_CP148227
Coordinates   1137017..1138357 (-) Length   446 a.a.
NCBI ID   WP_002852872.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132017..1143357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS05880 (WHP32_05880) - 1132154..1132924 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  WHP32_RS05885 (WHP32_05885) metE 1132936..1135200 (+) 2265 WP_052782591.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  WHP32_RS05890 (WHP32_05890) metF 1135210..1136058 (+) 849 WP_032583074.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  WHP32_RS05895 (WHP32_05895) - 1136080..1136271 (-) 192 WP_002914249.1 membrane protein -
  WHP32_RS05900 (WHP32_05900) atpB 1136268..1136948 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  WHP32_RS05905 (WHP32_05905) radA 1137017..1138357 (-) 1341 WP_002852872.1 DNA repair protein RadA Machinery gene
  WHP32_RS05910 (WHP32_05910) pilA 1138357..1139223 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  WHP32_RS05915 (WHP32_05915) - 1139223..1139780 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  WHP32_RS05920 (WHP32_05920) - 1139863..1140489 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  WHP32_RS05925 (WHP32_05925) rny 1140410..1141963 (+) 1554 WP_002858133.1 ribonuclease Y -
  WHP32_RS05930 (WHP32_05930) - 1141972..1142529 (+) 558 WP_002856055.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49054.94 Da        Isoelectric Point: 6.9288

>NTDB_id=868437 WHP32_RS05905 WP_002852872.1 1137017..1138357(-) (radA) [Campylobacter jejuni strain Z1323CCJ0040]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=868437 WHP32_RS05905 WP_002852872.1 1137017..1138357(-) (radA) [Campylobacter jejuni strain Z1323CCJ0040]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCCAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTACACAAAAAGGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTCGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGGGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTACTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGGTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTAGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGTAAAGATAGTATTTTTATAGGAGAACTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453