Detailed information NTG0868357

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q9451_RS27390
• Genome accession: NZ_CP132350
• Coordinates: 6068612..6069478 (+)
• Length: 288 a.a.
• NCBI ID: WP_012270394.1
• Uniprot ID: A0A7Y3XSM5
• Organism: Pseudomonas sp. NY8896
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6063612..6074478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9451_RS27365 (Q9451_27375)	-	6064692..6065690 (-)	999	WP_012270406.1	FecR domain-containing protein	-
Q9451_RS27370 (Q9451_27380)	-	6065687..6066193 (-)	507	WP_012270405.1	sigma-70 family RNA polymerase sigma factor	-
Q9451_RS27380 (Q9451_27390)	-	6066775..6067185 (-)	411	WP_012270395.1	pilin	-
Q9451_RS27385 (Q9451_27395)	-	6067402..6068609 (+)	1208	Protein_5389	type II secretion system F family protein	-
Q9451_RS27390 (Q9451_27400)	pilD	6068612..6069478 (+)	867	WP_012270394.1	A24 family peptidase	Machinery gene
Q9451_RS27395 (Q9451_27405)	coaE	6069478..6070101 (+)	624	WP_012270393.1	dephospho-CoA kinase	-
Q9451_RS27400 (Q9451_27410)	yacG	6070098..6070298 (+)	201	WP_012270392.1	DNA gyrase inhibitor YacG	-
Q9451_RS27405 (Q9451_27415)	-	6070510..6071193 (-)	684	WP_012270391.1	energy-coupling factor ABC transporter permease	-
Q9451_RS27410 (Q9451_27420)	-	6071291..6071920 (+)	630	WP_003247546.1	DUF1780 domain-containing protein	-
Q9451_RS27415 (Q9451_27425)	-	6072053..6072226 (+)	174	WP_008091951.1	DUF3094 domain-containing protein	-
Q9451_RS27420 (Q9451_27430)	-	6072311..6073606 (+)	1296	WP_012270390.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31945.08 Da
• Isoelectric Point: 7.5974

>NTDB_id=868357 Q9451_RS27390 WP_012270394.1 6068612..6069478(+) (pilD) [Pseudomonas sp. NY8896]
MTSWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLGQPIAQHERFDLCLPASRCPHCAHPIRA
WENIPVISYLALRGRCSSCKTRISPRYPLVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDALVL
PMLWLGLIVNAFGIYAPLTDALWGAVAGYLSLWTVYWLFKLITGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEMYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=868357 Q9451_RS27390 WP_012270394.1 6068612..6069478(+) (pilD) [Pseudomonas sp. NY8896]
ATGACTTCATGGACTTTGCTGGCTGAACAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGCTGGTGGGCAG
CTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAAGCACAGGAGATGTTGGGGC
AGCCGATTGCGCAACACGAACGGTTCGACCTGTGCCTACCGGCCTCCCGCTGCCCACATTGCGCGCATCCGATTCGCGCG
TGGGAGAACATCCCGGTGATCAGCTATCTGGCCTTGCGCGGGCGGTGTTCATCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGCTGGTGGAAGTGGCCAGCGCGCTGCTTTCGCTGGTGGTGGCCTGGCGCTTTGGCGCTTCGGTCGAAGCCTTGCTGG
CATTACCGCTCACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCGGACCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTTATCGTCAATGCCTTTGGCATCTATGCCCCACTGACCGACGCGCTGTGGGGCGCGGTGGC
CGGATACCTCAGCTTGTGGACCGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGCTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGTTGGCCTGTGCTTGCTGCGTTTGCGCCGGCATGCGATGGGGACAGCGATACCGTTTGGCCCTTATCTGGCGATTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATGTACGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

3D structure

• AlphaFold DB: A0A7Y3XSM5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.235	96.181	0.531
pilD	Acinetobacter baumannii D1279779	53.025	97.569	0.517
pilD	Acinetobacter nosocomialis M2	53.759	92.361	0.497
pilD	Vibrio campbellii strain DS40M4	49.638	95.833	0.476
pilD	Neisseria gonorrhoeae MS11	49.071	93.403	0.458