Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q9323_RS06825 Genome accession   NZ_CP132347
Coordinates   1509938..1512154 (+) Length   738 a.a.
NCBI ID   WP_049696353.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY5087     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1504938..1517154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9323_RS06805 (Q9323_06810) - 1506802..1507425 (+) 624 WP_027914345.1 glutathione S-transferase -
  Q9323_RS06810 (Q9323_06815) - 1507571..1508503 (+) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  Q9323_RS06815 (Q9323_06820) - 1508500..1509279 (+) 780 WP_023533108.1 ABC transporter permease -
  Q9323_RS06820 (Q9323_06825) - 1509163..1509795 (-) 633 WP_115933573.1 DUF2062 domain-containing protein -
  Q9323_RS06825 (Q9323_06830) comA 1509938..1512154 (+) 2217 WP_049696353.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q9323_RS06830 (Q9323_06835) exbB 1512216..1512851 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q9323_RS06835 (Q9323_06840) - 1512848..1513282 (+) 435 WP_027914349.1 biopolymer transporter ExbD -
  Q9323_RS06840 (Q9323_06845) lpxK 1513282..1514283 (+) 1002 WP_059183201.1 tetraacyldisaccharide 4'-kinase -
  Q9323_RS06845 (Q9323_06850) - 1514326..1514511 (+) 186 WP_003247142.1 Trm112 family protein -
  Q9323_RS06850 (Q9323_06855) kdsB 1514508..1515269 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q9323_RS06855 (Q9323_06860) - 1515269..1515733 (+) 465 WP_059183200.1 low molecular weight protein-tyrosine-phosphatase -
  Q9323_RS06860 (Q9323_06865) murB 1515730..1516749 (+) 1020 WP_345956680.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79516.20 Da        Isoelectric Point: 10.7480

>NTDB_id=868323 Q9323_RS06825 WP_049696353.1 1509938..1512154(+) (comA) [Pseudomonas fulva strain NY5087]
MRTGMLALALGLLSLGLVPQLPSVGWLLLLAAGAVVSLFTRGWLLGVFLLGFCWACWSAKQAMDDRLAPGLEGRALWLEG
RVVGLPARTAQGVRFDLEGAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPGGLLNPHGPDREAQLLARRVGASG
TVKAGQLLTPAPASWRDALRERLLAVEANGRQAALVALVLGDGTGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPARVPWLPWACALAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFHPLLLALVAVLLFEPL
AALLPGFWLSFGAVATLIYTFSARLGAWQPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGSAGEALLWLAGGLLDILFRALALVAQQRPAWVPPALPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLVALW
APREPVPDGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLRKLGVDSLDLLVVSHAHADHAGGAG
AIGRGLPIRRAIGGEPLEAVQLQPCVSGEQWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSSEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALHLVLGVQG
KVEGMRSQRRFWRDARGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=868323 Q9323_RS06825 WP_049696353.1 1509938..1512154(+) (comA) [Pseudomonas fulva strain NY5087]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGTCTGCTCAGCCTCGGCCTGGTGCCTCAACTGCCATCGGTCGGATGGCT
GTTATTGCTTGCGGCGGGCGCTGTCGTCAGTCTGTTCACCCGCGGGTGGTTGCTGGGCGTGTTCCTGCTGGGCTTTTGCT
GGGCCTGCTGGTCTGCCAAGCAGGCCATGGATGATCGTCTGGCGCCAGGGCTCGAGGGTCGCGCGTTATGGCTGGAAGGG
CGCGTGGTCGGCCTGCCGGCGCGCACCGCGCAAGGCGTTCGCTTTGACCTTGAGGGGGCGCATTCCCGGCGTGCCGAATT
GCCGCAACGCCTGCAATTGAGCTGGTTTGACGGGCCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTGACCCTGC
AGCGGCCGGGCGGGCTTTTGAACCCCCACGGGCCTGACCGGGAGGCGCAGTTGCTGGCACGTCGGGTCGGCGCCAGCGGA
ACGGTCAAAGCCGGGCAGTTACTGACGCCCGCGCCAGCCAGCTGGCGCGATGCGCTGCGCGAGCGGCTGCTGGCTGTCGA
GGCCAATGGTCGGCAAGCCGCGCTGGTGGCGCTGGTGCTTGGCGATGGAACAGGCCTGGCACGCGAGGACTGGCAGGCGC
TACAGGCAACCGGCACCGTGCACCTGCTGGTGATTTCGGGCCAGCACATCGGTCTGGTGGCGGGTCTGCTCTACGCCGTG
GTCGCGTGGTTGGCCCGCTGGGGGCTGTGGCCGGCCCGGGTGCCGTGGCTGCCTTGGGCCTGTGCGCTGGCCATGAGTGC
GGCGCTGGCCTACGGCTGGCTGGCTGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGGCTGCGCTTTCGTCATCTGGGTGCGTTTCACCCCTTGTTACTTGCGCTGGTTGCCGTACTGCTGTTCGAGCCATTG
GCAGCGCTGCTTCCAGGTTTCTGGTTGTCATTCGGCGCCGTGGCCACGCTCATCTACACCTTCAGTGCCCGGCTAGGGGC
TTGGCAACCCTGGCAGGCCTGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGCTGCTCCCAGTGCTGCTGGCGGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGCTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCTTGGCGGTATTGCCGCTGGCGCTA
TTGGGCACCTTGTTGCTGCCCTTGGGAAGCGCAGGTGAGGCCTTGCTGTGGCTGGCAGGCGGCCTGCTGGATATCTTGTT
TCGCGCCTTGGCGCTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCCGCATTGCCGTTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCGCTGCGTGGGTTGGGTGCGGTGATGCTCGTGGCGCTCTGG
GCACCTCGCGAGCCTGTCCCGGATGGCCAAGTCGAGGTGTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
TACCCGGCAGCACAGTCTGCTGTATGACGCAGGTCCAGCCAGGGGTGAAAGCGATCTGGGTGAACGGGTCGTGTTGCCCA
CCTTGCGCAAGTTGGGGGTCGACAGCCTGGATCTGCTGGTGGTCAGTCACGCCCATGCCGATCACGCCGGCGGTGCAGGT
GCAATCGGGCGCGGGCTGCCGATCAGGCGGGCGATTGGCGGTGAGCCGCTGGAAGCGGTTCAGTTACAGCCTTGCGTCAG
TGGCGAGCAGTGGGAGTGGGACGGCGTGCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAATGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGCGAGCGTTTGCTGCTGGCCGGGGACATGGAGGCGGGGGCCGAACGTGCGTGGCTG
GCTGCCATGGACTCACCACGCATCGACTGGCTGCAGTCGCCTCACCACGGCAGCCGCAGTTCGTCGAGCGAAGCCTTCAT
CCGCGCTGCAGCCCCGCGTGGGGTACTGATATCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGGCATGGCATGACCCTTCACGACACGGCGGTGGAGGGGGCGTTGCATCTGGTGCTCGGTGTGCAAGGA
AAGGTCGAGGGTATGCGCAGCCAGCGCCGGTTCTGGCGTGACGCCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.275

97.425

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.294

100

0.374