Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP40_RS05375 Genome accession   NZ_CP148223
Coordinates   1040953..1041504 (-) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1035953..1046504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS05345 (WHP40_05345) ctsT 1036003..1036305 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  WHP40_RS05350 (WHP40_05350) proC 1036302..1037033 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP40_RS05355 (WHP40_05355) fliW 1037033..1037422 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP40_RS05360 (WHP40_05360) - 1037583..1038230 (+) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHP40_RS05365 (WHP40_05365) lon 1038247..1040622 (+) 2376 WP_002852988.1 endopeptidase La -
  WHP40_RS05370 (WHP40_05370) rpsR 1040682..1040942 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP40_RS05375 (WHP40_05375) ssb 1040953..1041504 (-) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  WHP40_RS05380 (WHP40_05380) rpsF 1041513..1041890 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  WHP40_RS05385 (WHP40_05385) - 1041977..1042843 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP40_RS05390 (WHP40_05390) rseP 1042836..1043942 (-) 1107 WP_228567893.1 RIP metalloprotease RseP -
  WHP40_RS05395 (WHP40_05395) pgsA 1043939..1044475 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP40_RS05400 (WHP40_05400) rdxA 1044600..1045205 (-) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP40_RS05405 (WHP40_05405) - 1045205..1045825 (-) 621 WP_002852938.1 NAD(P)H-dependent oxidoreductase -
  WHP40_RS05410 (WHP40_05410) - 1045889..1046314 (-) 426 WP_002852983.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=868309 WHP40_RS05375 WP_002853013.1 1040953..1041504(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0045]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=868309 WHP40_RS05375 WP_002853013.1 1040953..1041504(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0045]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361