Detailed information NTG0868259

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q8L25_RS05795
• Genome accession: NZ_CP132339
• Coordinates: 1280031..1280900 (-)
• Length: 289 a.a.
• NCBI ID: WP_308923971.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. J1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1275031..1285900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q8L25_RS05760	-	1276204..1277085 (+)	882	WP_308923964.1	ATP-binding protein	-
Q8L25_RS05765	-	1277082..1277504 (+)	423	WP_308923965.1	NUDIX domain-containing protein	-
Q8L25_RS05770	-	1277588..1277803 (+)	216	WP_308923966.1	DNA-binding protein	-
Q8L25_RS05775	-	1277787..1278224 (+)	438	WP_308923967.1	VapC toxin family PIN domain ribonuclease	-
Q8L25_RS05780	yacG	1278337..1278528 (-)	192	WP_308923968.1	DNA gyrase inhibitor YacG	-
Q8L25_RS05785	zapD	1278540..1279295 (-)	756	WP_308923969.1	cell division protein ZapD	-
Q8L25_RS05790	coaE	1279358..1280017 (-)	660	WP_308923970.1	dephospho-CoA kinase	-
Q8L25_RS05795	pilD	1280031..1280900 (-)	870	WP_308923971.1	A24 family peptidase	Machinery gene
Q8L25_RS05800	-	1281005..1281337 (-)	333	WP_308923972.1	XRE family transcriptional regulator	-
Q8L25_RS05805	-	1281334..1281681 (-)	348	WP_308923973.1	type II toxin-antitoxin system RelE/ParE family toxin	-
Q8L25_RS05810	-	1281778..1282974 (-)	1197	WP_308923974.1	type II secretion system F family protein	-
Q8L25_RS05815	-	1283049..1284533 (-)	1485	WP_308923975.1	DHA2 family efflux MFS transporter permease subunit	-
Q8L25_RS05820	-	1284734..1285888 (+)	1155	WP_308923976.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30937.82 Da
• Isoelectric Point: 8.1361

>NTDB_id=868259 Q8L25_RS05795 WP_308923971.1 1280031..1280900(-) (pilD) [Janthinobacterium sp. J1-1]
MLQDTLLFAAPGNLFVTLVAALFGLIVGSFLNVVIHRIPKMMQRESDNYVAVESGKPPPHTDKYNLMLPHSHCTACGHRI
TALENIPVVSYLALRGQCRACKAPISPRYPLVEMLTGALSALLVWHFGSGWTGLATLLFAFLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLADAVIGAAAGYLALWSVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSVV
GALVGIVLIVFAKRGRDKPIPFGPYLAAAGVIALLYGAPLSQLTLGLVG

Nucleotide

• Length: 870 bp

>NTDB_id=868259 Q8L25_RS05795 WP_308923971.1 1280031..1280900(-) (pilD) [Janthinobacterium sp. J1-1]
ATGCTGCAAGATACCCTGTTGTTCGCCGCGCCCGGCAATCTGTTCGTCACGCTGGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTTCTCAATGTCGTGATCCACCGCATCCCGAAGATGATGCAGCGCGAGTCCGACAATTACGTGGCGGTGGAAA
GCGGCAAGCCGCCGCCGCACACCGACAAATACAATCTGATGCTGCCGCATTCGCACTGCACCGCCTGCGGCCACCGCATC
ACCGCGCTGGAAAACATTCCCGTCGTCAGCTACCTGGCCCTGCGCGGCCAGTGCCGCGCCTGCAAGGCGCCGATTTCGCC
GCGCTATCCGCTGGTGGAAATGTTGACGGGCGCGCTGTCGGCGCTGCTGGTCTGGCATTTCGGCAGCGGCTGGACCGGGC
TGGCCACTTTGCTGTTCGCCTTCCTGCTGATCGCCATGACCTTTATCGACGCCGATACGCAGATGCTGCCCGACGACCTG
ACGTTTCCGCTGCTGTGGGCGGGGTTGCTGGTCAATATCAACGGCACCTTCGTGCCGCTTGCCGACGCCGTGATCGGCGC
GGCTGCCGGCTACCTGGCCCTGTGGAGCGTCTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAAGGAATGGGGTATGGTG
ACTTCAAATTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGACCATGCTGCCGACGATTATTTTATTGTCGTCCGTGGTC
GGCGCGCTGGTCGGCATCGTCCTGATCGTGTTTGCCAAACGCGGGCGCGACAAACCCATTCCCTTCGGTCCCTACCTGGC
CGCCGCCGGCGTGATCGCCCTGCTGTATGGCGCGCCGCTGTCGCAGCTGACCCTGGGTCTGGTGGGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.712	91.349	0.536
pilD	Vibrio campbellii strain DS40M4	55.056	92.388	0.509
pilD	Acinetobacter baumannii D1279779	45.645	99.308	0.453
pilD	Acinetobacter nosocomialis M2	44.599	99.308	0.443
pilD	Neisseria gonorrhoeae MS11	48.846	89.965	0.439