Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP87_RS06050 Genome accession   NZ_CP148222
Coordinates   1178504..1179052 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1173504..1184052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS06015 (WHP87_06015) - 1173694..1174119 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  WHP87_RS06020 (WHP87_06020) - 1174183..1174803 (+) 621 WP_002852938.1 NAD(P)H-dependent oxidoreductase -
  WHP87_RS06025 (WHP87_06025) - 1174803..1175408 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP87_RS06030 (WHP87_06030) pgsA 1175533..1176069 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP87_RS06035 (WHP87_06035) rseP 1176066..1177172 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHP87_RS06040 (WHP87_06040) - 1177165..1178031 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP87_RS06045 (WHP87_06045) rpsF 1178118..1178495 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  WHP87_RS06050 (WHP87_06050) ssb 1178504..1179052 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  WHP87_RS06055 (WHP87_06055) rpsR 1179063..1179323 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP87_RS06060 (WHP87_06060) lon 1179383..1181758 (-) 2376 WP_002852988.1 endopeptidase La -
  WHP87_RS06065 (WHP87_06065) - 1181775..1182422 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHP87_RS06070 (WHP87_06070) fliW 1182583..1182972 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP87_RS06075 (WHP87_06075) proC 1182972..1183703 (+) 732 WP_060816226.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP87_RS06080 (WHP87_06080) ctsT 1183700..1184002 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=868245 WHP87_RS06050 WP_002860190.1 1178504..1179052(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0047]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=868245 WHP87_RS06050 WP_002860190.1 1178504..1179052(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0047]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363