Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RAL92_RS05385 Genome accession   NZ_CP132337
Coordinates   1148996..1150591 (-) Length   531 a.a.
NCBI ID   WP_142012038.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain Tg_9B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143996..1155591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL92_RS05370 (RAL92_05375) - 1146079..1146495 (+) 417 WP_346841798.1 type IV pilin protein -
  RAL92_RS05375 (RAL92_05380) thiO 1146546..1147640 (+) 1095 WP_346841799.1 glycine oxidase ThiO -
  RAL92_RS05380 (RAL92_05385) pilR 1147653..1148993 (-) 1341 WP_044410357.1 sigma-54 dependent transcriptional regulator Regulator
  RAL92_RS05385 (RAL92_05390) pilS 1148996..1150591 (-) 1596 WP_142012038.1 ATP-binding protein Regulator
  RAL92_RS05390 (RAL92_05395) - 1150578..1150814 (-) 237 WP_044410363.1 PP0621 family protein -
  RAL92_RS05395 (RAL92_05400) - 1150961..1151959 (-) 999 WP_044410365.1 outer membrane protein assembly factor BamD -
  RAL92_RS05400 (RAL92_05405) rluD 1152107..1153078 (+) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RAL92_RS05405 (RAL92_05410) pgeF 1153078..1153803 (+) 726 WP_346841800.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 59132.33 Da        Isoelectric Point: 8.3571

>NTDB_id=868209 RAL92_RS05385 WP_142012038.1 1148996..1150591(-) (pilS) [Pseudomonas otitidis strain Tg_9B]
MASTESPSLASNQIRRIFRLYNLYRLLIGLALVGLISSELDSELLNLARVQLFRNASWFYLLLNILIALMVRRPQHMLQV
FSLALVDVILLSCIFYAAGGSPSGIGNLIIVAVAIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSRPEAANQYVQAGAL
GALCFAGALFVQGISRRLQLSETLAEQRAADVANLEALNALILQRMRTGILVLDSRHRVLLANQAAQAMLGHDGLAGRPL
GPHCPELLKRLEQWWDNPTLRPQSLQPVPDGTVLQPSFVQLQRGEQLDTLVFLEDISQIAQQAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLQESEELEGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRSASPV
GQTLHLETNPGSIQTRMDPHQLTQVLTNLVQNGLRYSAQKNRQGQVWLKLFRDAESDLPILEVMDDGPGVAEEQLHHLFE
PFHTTENKGTGLGLYISRELCESNQARLDYRPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=868209 RAL92_RS05385 WP_142012038.1 1148996..1150591(-) (pilS) [Pseudomonas otitidis strain Tg_9B]
GTGGCGAGCACTGAGTCGCCCTCCCTGGCGAGCAATCAGATCCGACGGATCTTCCGCCTTTACAACCTGTATCGCCTGCT
CATCGGCCTGGCGCTGGTCGGGTTGATTTCCAGTGAGCTGGACAGCGAGTTGCTGAACCTGGCCCGTGTCCAGCTGTTCC
GTAATGCCAGCTGGTTCTACCTGCTGCTGAACATCCTCATTGCGCTGATGGTGCGCCGCCCCCAGCACATGCTGCAGGTG
TTCAGCCTGGCGCTGGTGGACGTCATCCTGCTGTCCTGCATCTTCTATGCAGCGGGCGGCTCGCCCAGTGGTATCGGCAA
CCTGATCATCGTTGCGGTGGCCATTGCCAACATCCTGCTGCGTGGGCGAATCGGGCTGCTGATCGCCGCCGTCGCCGCCA
TCGGGATGATCTACCTGACCTTCTACCTGAGCTTGTCGCGCCCGGAAGCGGCCAACCAGTACGTACAGGCCGGTGCGCTT
GGAGCCCTGTGCTTTGCAGGCGCCCTGTTCGTGCAGGGCATCAGCCGGCGCCTGCAGTTGAGCGAGACCCTGGCCGAGCA
GCGTGCTGCCGACGTGGCCAATCTGGAAGCGCTCAACGCGCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGG
ACAGCCGTCACCGGGTGTTGCTGGCCAACCAGGCTGCCCAGGCGATGCTGGGGCACGACGGGCTGGCGGGGCGCCCCCTC
GGGCCGCACTGCCCGGAGCTGCTCAAGCGGCTGGAGCAGTGGTGGGACAACCCGACCCTGCGCCCCCAGAGCCTGCAGCC
GGTACCCGATGGCACGGTGCTGCAGCCCAGCTTCGTCCAGCTGCAGCGCGGTGAGCAGCTGGATACGCTGGTCTTCCTCG
AAGATATCTCGCAGATCGCCCAGCAGGCGCAGCAGCTGAAGCTGGCCTCCCTCGGGCGGCTGACCGCCGGTATCGCCCAT
GAGATCCGCAATCCCCTGGGCGCCATCAGTCATGCCGCCCAGCTGTTGCAGGAGTCCGAAGAGCTGGAGGGGCCCGACCG
CCGCCTGGCGCAGATCATCCAGGACCATTCCCGGCGGATGAACCTCGTCATCGAGAACGTCCTGCAACTGTCGCGGCGCC
GCCAGTCGGAACCCCAGCTGCTGGATCTCAAGTACTGGCTGCACCGATTCGCCAGCGAGTTCCGCAGCGCCTCACCGGTG
GGCCAGACCCTTCACCTGGAAACCAACCCGGGCAGCATTCAGACCCGCATGGACCCCCACCAGCTCACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGCGCAGAAAAATCGCCAGGGGCAGGTCTGGCTGAAACTCTTCCGTGACG
CCGAGAGCGACCTGCCCATACTGGAAGTGATGGACGACGGCCCTGGCGTCGCCGAGGAGCAGCTCCATCACCTGTTCGAG
CCCTTCCACACCACGGAGAACAAGGGCACCGGGCTTGGCCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCCCG
CCTTGACTATCGACCCCGCGAAGGCGGCGGCAGCTGTTTCCGCATCACCTTCGCCCATCCGCGAAAACTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

PAS domain (PAS_8)

(203-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.495

98.493

0.665