Detailed information NTG0868208

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RAL92_RS05380
• Genome accession: NZ_CP132337
• Coordinates: 1147653..1148993 (-)
• Length: 446 a.a.
• NCBI ID: WP_044410357.1
• Uniprot ID: A0A0D6SA47
• Organism: Pseudomonas otitidis strain Tg_9B
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1142653..1153993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAL92_RS05365 (RAL92_05370)	-	1142981..1146070 (+)	3090	WP_346841797.1	PilC/PilY family type IV pilus protein	-
RAL92_RS05370 (RAL92_05375)	-	1146079..1146495 (+)	417	WP_346841798.1	type IV pilin protein	-
RAL92_RS05375 (RAL92_05380)	thiO	1146546..1147640 (+)	1095	WP_346841799.1	glycine oxidase ThiO	-
RAL92_RS05380 (RAL92_05385)	pilR	1147653..1148993 (-)	1341	WP_044410357.1	sigma-54 dependent transcriptional regulator	Regulator
RAL92_RS05385 (RAL92_05390)	pilS	1148996..1150591 (-)	1596	WP_142012038.1	ATP-binding protein	Regulator
RAL92_RS05390 (RAL92_05395)	-	1150578..1150814 (-)	237	WP_044410363.1	PP0621 family protein	-
RAL92_RS05395 (RAL92_05400)	-	1150961..1151959 (-)	999	WP_044410365.1	outer membrane protein assembly factor BamD	-
RAL92_RS05400 (RAL92_05405)	rluD	1152107..1153078 (+)	972	WP_044410847.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
RAL92_RS05405 (RAL92_05410)	pgeF	1153078..1153803 (+)	726	WP_346841800.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49956.26 Da
• Isoelectric Point: 6.0001

>NTDB_id=868208 RAL92_RS05380 WP_044410357.1 1147653..1148993(-) (pilR) [Pseudomonas otitidis strain Tg_9B]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGQELVQYIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGESDEEASVDSRLLGESPPMRALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRASHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAAHGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLFYRLNVIELGVPPLRERREDIPRLADV
MLKRLAEACSLPAATLTRDALEKLKTYRFPGNVRELENMLERAYTLCENDQIQPHDLRFTEAAGAAEGGEADLAKIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1341 bp

>NTDB_id=868208 RAL92_RS05380 WP_044410357.1 1147653..1148993(-) (pilR) [Pseudomonas otitidis strain Tg_9B]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCCCGCGAACCGTTCGACCTCTGCCTGACGG
ACATGCGCCTGCCCGATGGCACCGGGCAGGAGCTGGTGCAGTACATCCAGCAGCGCCATCCCCAGGTGCCGGTGGCCATG
ATCACGGCCTACGGCAGCCTGGATACCGCCATCAATGCCCTCAAGGCCGGTGCCTTCGACTTCCTGACCAAGCCAGTGGA
CCTTGGCCGTCTGCGCGAGCTGGTGGCGACTGCCCTGCGGCTGCGCAGCGGCGAGTCGGATGAAGAAGCCAGCGTCGACA
GCCGCCTGCTGGGCGAATCGCCCCCGATGCGGGCGTTGCGCAACCAGATCCAGAAACTCGCCCGCAGCCAGGCGCCCGTC
TACATCAGCGGCGAGTCGGGAAGCGGCAAGGAACTGGTCGCACGACTCATTCATGAGCAAGGCCCGCGCGCCAGTCACCC
CTTCGTGCCGGTGAACTGCGGTGCCATTCCGTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGTGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCTGCCCACGGTGGCACCCTGTTCCTCGACGAAGTGGCCGACCTG
CCGCTGCCCATGCAGGTCAAGCTGCTGCGGGCCATTCAGGAGAAGGCGGTACGTGCCGTTGGTGGCCAGCAGGAAGTGGT
GGTGGACGTGCGCATCCTCAGTGCCACTCACAAGGACCTGGCTGCCGAGGTGGCAGCCGGGCGATTCCGCCAGGACCTGT
TCTACCGGCTCAATGTGATCGAACTGGGGGTGCCACCGTTGCGTGAGCGCCGCGAAGACATTCCCCGCCTGGCAGACGTG
ATGCTCAAGCGCCTGGCCGAAGCCTGTTCGCTGCCGGCCGCGACCCTTACCCGTGATGCGCTGGAGAAGCTCAAGACCTA
CCGCTTCCCCGGGAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACCCTGTGCGAGAACGACCAGATCCAGC
CTCATGACCTGCGCTTTACCGAGGCTGCGGGCGCGGCAGAGGGCGGCGAGGCGGACCTTGCCAAGATCGACAACCTCGAG
GACTACCTCGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAGACCCGCTGGAACCGCACGGCAGCAGCCCA
ACGTCTTGGGCTGACCTTCCGTTCCATGCGTTACAGGCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

3D structure

• AlphaFold DB: A0A0D6SA47

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	88.565	100	0.886
pilR	Acinetobacter baumannii strain A118	50.327	100	0.518