Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RAL92_RS01970 Genome accession   NZ_CP132337
Coordinates   395946..396353 (+) Length   135 a.a.
NCBI ID   WP_021218373.1    Uniprot ID   A0AB36F8H0
Organism   Pseudomonas otitidis strain Tg_9B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 390946..401353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL92_RS01940 (RAL92_01945) - 391116..392120 (-) 1005 WP_044403578.1 aspartate carbamoyltransferase catalytic subunit -
  RAL92_RS01945 (RAL92_01950) pyrR 392146..392655 (-) 510 WP_044403576.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RAL92_RS01950 (RAL92_01955) ruvX 392668..393111 (-) 444 WP_346841517.1 Holliday junction resolvase RuvX -
  RAL92_RS01955 (RAL92_01960) - 393111..393680 (-) 570 WP_346841518.1 YqgE/AlgH family protein -
  RAL92_RS01960 (RAL92_01965) - 393727..394620 (-) 894 WP_182851510.1 energy transducer TonB -
  RAL92_RS01965 (RAL92_01970) gshB 394708..395679 (-) 972 WP_346841519.1 glutathione synthase -
  RAL92_RS01970 (RAL92_01975) pilG 395946..396353 (+) 408 WP_021218373.1 twitching motility response regulator PilG Regulator
  RAL92_RS01975 (RAL92_01980) pilH 396401..396766 (+) 366 WP_003458790.1 twitching motility response regulator PilH -
  RAL92_RS01980 (RAL92_01985) - 396810..397346 (+) 537 WP_279803187.1 chemotaxis protein CheW -
  RAL92_RS01985 (RAL92_01990) - 397540..399585 (+) 2046 WP_346841520.1 methyl-accepting chemotaxis protein -
  RAL92_RS01990 (RAL92_01995) - 399647..400507 (+) 861 WP_346842534.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14842.21 Da        Isoelectric Point: 6.7128

>NTDB_id=868205 RAL92_RS01970 WP_021218373.1 395946..396353(+) (pilG) [Pseudomonas otitidis strain Tg_9B]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=868205 RAL92_RS01970 WP_021218373.1 395946..396353(+) (pilG) [Pseudomonas otitidis strain Tg_9B]
ATGGAACAGCATTCCGAGGGTTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGTCGCACCGCTGAAACTCTGCT
GAAGAAGGTGGGTTGCGAGGTCATCACGGCTGTCGACGGTTTCGATGCCCTGGCCAAGATCGCGGACACACACCCGAACA
TCATCTTTGTCGACATCATGATGCCGCGTCTCGACGGTTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCTTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGACCAGTA
CCTCACCAAGCCCTTCAGCAAGGAAGAACTGCTCGGCGCGATCAAGACCCACGTGCCTGATTTCACCCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385