Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP55_RS03140 Genome accession   NZ_CP148220
Coordinates   604004..604777 (+) Length   257 a.a.
NCBI ID   WP_060806473.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0053     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 599004..609777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP55_RS03125 (WHP55_03125) - 599853..601787 (-) 1935 WP_167843424.1 ribonuclease R family protein -
  WHP55_RS03130 (WHP55_03130) ilvC 601906..602928 (+) 1023 WP_167843425.1 ketol-acid reductoisomerase -
  WHP55_RS03135 (WHP55_03135) - 602932..604014 (+) 1083 WP_060806472.1 divergent polysaccharide deacetylase family protein -
  WHP55_RS03140 (WHP55_03140) dprA 604004..604777 (+) 774 WP_060806473.1 DNA-processing protein DprA Machinery gene
  WHP55_RS03145 (WHP55_03145) dprB 604774..605157 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  WHP55_RS03150 (WHP55_03150) - 605186..606025 (+) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP55_RS03155 (WHP55_03155) msrA 606201..606698 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP55_RS03160 (WHP55_03160) ppa 606740..607258 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHP55_RS03165 (WHP55_03165) adk 607268..607846 (-) 579 WP_032590860.1 adenylate kinase -
  WHP55_RS03170 (WHP55_03170) aspS 607843..609594 (-) 1752 WP_060806474.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28866.65 Da        Isoelectric Point: 6.4874

>NTDB_id=868145 WHP55_RS03140 WP_060806473.1 604004..604777(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0053]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=868145 WHP55_RS03140 WP_060806473.1 604004..604777(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0053]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459