Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   Q8X41_RS05650 Genome accession   NZ_CP132291
Coordinates   1133344..1133658 (-) Length   104 a.a.
NCBI ID   WP_397539280.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1128344..1138658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS05615 gcvPA 1128458..1129804 (-) 1347 WP_397539273.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q8X41_RS05620 gcvT 1129830..1130930 (-) 1101 WP_397539274.1 glycine cleavage system aminomethyltransferase GcvT -
  Q8X41_RS05625 - 1131312..1131824 (-) 513 WP_397539275.1 shikimate kinase -
  Q8X41_RS05630 - 1131998..1132168 (-) 171 WP_397539276.1 hypothetical protein -
  Q8X41_RS05635 comGF 1132179..1132622 (-) 444 WP_397539277.1 competence type IV pilus minor pilin ComGF -
  Q8X41_RS05640 - 1132601..1132906 (-) 306 WP_397539278.1 hypothetical protein -
  Q8X41_RS05645 comGD 1132896..1133360 (-) 465 WP_397539279.1 competence type IV pilus minor pilin ComGD -
  Q8X41_RS05650 comGC 1133344..1133658 (-) 315 WP_397539280.1 competence type IV pilus major pilin ComGC Machinery gene
  Q8X41_RS05655 comGB 1133672..1134745 (-) 1074 WP_397539281.1 competence type IV pilus assembly protein ComGB -
  Q8X41_RS05660 comGA 1134705..1135736 (-) 1032 WP_397539282.1 competence type IV pilus ATPase ComGA -
  Q8X41_RS05665 - 1136036..1136731 (+) 696 WP_397539283.1 helix-turn-helix transcriptional regulator -
  Q8X41_RS05670 - 1136869..1137111 (+) 243 WP_397539284.1 DUF2626 domain-containing protein -
  Q8X41_RS05675 - 1137781..1138419 (-) 639 WP_397539285.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11583.53 Da        Isoelectric Point: 6.9471

>NTDB_id=868001 Q8X41_RS05650 WP_397539280.1 1133344..1133658(-) (comGC) [Rummeliibacillus pycnus strain X33]
MILKQNNQKGFTLIEMLIVLFIISVLILIAIPNVTKHFTTVDKKGCDAYVKMVQGQVEAYRIDLGQYPTSISELENKEYL
KASDSKTCEGKTITIADGKVDVSN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=868001 Q8X41_RS05650 WP_397539280.1 1133344..1133658(-) (comGC) [Rummeliibacillus pycnus strain X33]
ATGATATTAAAACAAAACAATCAAAAAGGATTTACTTTAATCGAGATGTTAATTGTGTTGTTTATTATTTCAGTTCTGAT
TTTAATAGCCATTCCAAATGTAACAAAGCACTTCACAACAGTTGATAAGAAGGGCTGCGATGCCTACGTCAAAATGGTAC
AGGGACAAGTAGAGGCTTATCGCATTGATTTAGGACAATATCCGACGTCGATATCAGAATTAGAAAATAAAGAATATTTA
AAAGCAAGTGATTCAAAAACATGTGAAGGGAAAACAATTACGATAGCAGATGGAAAAGTTGACGTTTCAAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

51.515

95.192

0.49
  comGC Staphylococcus aureus MW2

45.161

89.423

0.404
  comGC Staphylococcus aureus N315

45.161

89.423

0.404