Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP61_RS08265 Genome accession   NZ_CP148214
Coordinates   1545383..1545934 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1540383..1550934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS08230 (WHP61_08230) - 1540572..1540997 (+) 426 WP_100609488.1 GNAT family N-acetyltransferase -
  WHP61_RS08235 (WHP61_08235) - 1541061..1541681 (+) 621 WP_220520952.1 NAD(P)H-dependent oxidoreductase -
  WHP61_RS08240 (WHP61_08240) - 1541681..1542286 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP61_RS08245 (WHP61_08245) pgsA 1542411..1542947 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP61_RS08250 (WHP61_08250) rseP 1542944..1544050 (+) 1107 WP_002934663.1 RIP metalloprotease RseP -
  WHP61_RS08255 (WHP61_08255) - 1544043..1544910 (+) 868 Protein_1595 VirK family antimicrobial peptide resistance protein -
  WHP61_RS08260 (WHP61_08260) rpsF 1544997..1545374 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  WHP61_RS08265 (WHP61_08265) ssb 1545383..1545934 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  WHP61_RS08270 (WHP61_08270) rpsR 1545945..1546205 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP61_RS08275 (WHP61_08275) lon 1546266..1548641 (-) 2376 WP_070289967.1 endopeptidase La -
  WHP61_RS08280 (WHP61_08280) - 1548658..1549305 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  WHP61_RS08285 (WHP61_08285) fliW 1549466..1549855 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP61_RS08290 (WHP61_08290) proC 1549855..1550586 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP61_RS08295 (WHP61_08295) ctsT 1550583..1550885 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=867984 WHP61_RS08265 WP_002865738.1 1545383..1545934(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0059]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=867984 WHP61_RS08265 WP_002865738.1 1545383..1545934(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0059]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361