Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   Q9318_RS09905 Genome accession   NZ_CP132229
Coordinates   2063656..2064369 (+) Length   237 a.a.
NCBI ID   WP_003100405.1    Uniprot ID   A0A3L8GBZ9
Organism   Streptococcus iniae strain BH16-24     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2058656..2069369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9318_RS09895 (Q9318_09895) treC 2059785..2061410 (-) 1626 WP_003100403.1 alpha,alpha-phosphotrehalase -
  Q9318_RS09900 (Q9318_09900) treP 2061475..2063451 (-) 1977 WP_061866600.1 PTS system trehalose-specific EIIBC component -
  Q9318_RS09905 (Q9318_09905) treR 2063656..2064369 (+) 714 WP_003100405.1 trehalose operon repressor Regulator
  Q9318_RS09910 (Q9318_09910) yaaA 2064428..2065159 (+) 732 WP_031239270.1 peroxide stress protein YaaA -
  Q9318_RS09915 (Q9318_09915) nrdG 2065263..2065883 (-) 621 WP_003100407.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  Q9318_RS09920 (Q9318_09920) - 2065893..2066393 (-) 501 WP_003100408.1 GNAT family N-acetyltransferase -
  Q9318_RS09925 (Q9318_09925) - 2066404..2067336 (-) 933 WP_003100409.1 Gfo/Idh/MocA family protein -
  Q9318_RS09930 (Q9318_09930) - 2067365..2067511 (-) 147 WP_003100410.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27483.80 Da        Isoelectric Point: 9.5104

>NTDB_id=867864 Q9318_RS09905 WP_003100405.1 2063656..2064369(+) (treR) [Streptococcus iniae strain BH16-24]
MKKYESIFKDLETKISKEVYAIDDFLPTEIELSKDYNVSRDTIRKALNLLAKAGLVKKQQGRGTQVIKHHHILFPISELT
SYQELVSYFDMDSKTNVIAIDKLIVDPKMEKLTGFPTHSLVWRVTRQRVVDGVASVLDIDYLDKDIVPNMTREIAQISLY
AFLEKDLKLSIDFALKEVTIDQVNDRDKILLDLGSDKHVVSVKSKVYLSNNKQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=867864 Q9318_RS09905 WP_003100405.1 2063656..2064369(+) (treR) [Streptococcus iniae strain BH16-24]
ATGAAGAAATACGAAAGCATTTTTAAAGACCTCGAAACAAAAATTTCAAAAGAAGTTTATGCCATAGATGACTTTTTACC
AACTGAAATCGAATTAAGTAAAGACTATAATGTTAGTAGGGATACTATTCGAAAAGCACTCAATCTTTTAGCAAAAGCTG
GTTTGGTCAAAAAACAACAAGGTCGAGGAACACAGGTGATTAAACACCACCATATTTTATTTCCTATATCTGAATTAACA
AGTTACCAAGAACTTGTTTCCTATTTTGATATGGATTCTAAAACCAACGTGATTGCTATTGACAAACTCATTGTTGATCC
TAAAATGGAAAAGTTGACTGGCTTTCCAACACATTCACTGGTTTGGCGCGTTACCAGACAAAGAGTGGTAGACGGGGTTG
CCTCTGTATTGGATATCGACTATTTGGACAAGGATATTGTGCCAAATATGACAAGGGAAATCGCCCAAATATCACTTTAT
GCCTTCTTGGAAAAAGACTTAAAACTGTCTATTGATTTTGCTCTAAAGGAAGTCACTATCGATCAAGTCAATGACCGAGA
TAAAATTCTATTAGATCTTGGTTCAGACAAACATGTGGTTTCTGTCAAATCTAAAGTATACCTCTCAAATAACAAGCAAT
TTCAATTTACTGAAAGCCGACATAAATTAGAGAAATTCAAATTTGTTGATTTTGCAAGACGCAATCCCAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GBZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.66

99.156

0.671