Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | Q9318_RS05825 | Genome accession | NZ_CP132229 |
| Coordinates | 1165195..1166424 (+) | Length | 409 a.a. |
| NCBI ID | WP_306102464.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain BH16-24 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1136814..1185783 | 1165195..1166424 | within | 0 |
Gene organization within MGE regions
Location: 1136814..1185783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9318_RS05700 (Q9318_05700) | - | 1136814..1137428 (+) | 615 | WP_016356029.1 | glycoside hydrolase family 73 protein | - |
| Q9318_RS05705 (Q9318_05705) | - | 1137553..1138296 (+) | 744 | WP_121791517.1 | glycoside hydrolase family 73 protein | - |
| Q9318_RS05710 (Q9318_05710) | tnpA | 1138435..1138908 (-) | 474 | WP_003099875.1 | IS200/IS605 family transposase | - |
| Q9318_RS05715 (Q9318_05715) | - | 1139105..1139626 (+) | 522 | WP_003099873.1 | hypothetical protein | - |
| Q9318_RS05720 (Q9318_05720) | - | 1139699..1140079 (+) | 381 | WP_003099871.1 | DUF1149 family protein | - |
| Q9318_RS05725 (Q9318_05725) | - | 1140079..1140930 (+) | 852 | WP_016356025.1 | DegV family protein | - |
| Q9318_RS05730 (Q9318_05730) | dapB | 1140947..1141714 (+) | 768 | WP_003099866.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| Q9318_RS05735 (Q9318_05735) | - | 1141711..1142919 (+) | 1209 | WP_003099863.1 | CCA tRNA nucleotidyltransferase | - |
| Q9318_RS05740 (Q9318_05740) | - | 1142916..1144802 (+) | 1887 | WP_003099861.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| Q9318_RS05745 (Q9318_05745) | - | 1144804..1145283 (+) | 480 | WP_003099856.1 | GNAT family N-acetyltransferase | - |
| Q9318_RS05750 (Q9318_05750) | - | 1145385..1147127 (+) | 1743 | WP_003099854.1 | ABC transporter ATP-binding protein | - |
| Q9318_RS05755 (Q9318_05755) | - | 1147127..1148893 (+) | 1767 | WP_003099853.1 | ABC transporter ATP-binding protein | - |
| Q9318_RS05760 (Q9318_05760) | gdhA | 1149027..1150376 (+) | 1350 | WP_003099852.1 | NADP-specific glutamate dehydrogenase | - |
| Q9318_RS05765 (Q9318_05765) | - | 1150456..1150866 (+) | 411 | WP_003099851.1 | peptide deformylase | - |
| Q9318_RS05770 (Q9318_05770) | - | 1150902..1152932 (-) | 2031 | WP_121791516.1 | 5'-nucleotidase C-terminal domain-containing protein | - |
| Q9318_RS05775 (Q9318_05775) | - | 1153508..1155229 (+) | 1722 | WP_305981616.1 | ABC transporter ATP-binding protein | - |
| Q9318_RS05780 (Q9318_05780) | - | 1155231..1156973 (+) | 1743 | WP_003099847.1 | ABC transporter ATP-binding protein | - |
| Q9318_RS05785 (Q9318_05785) | mvk | 1157104..1157988 (+) | 885 | WP_003099844.1 | mevalonate kinase | - |
| Q9318_RS05790 (Q9318_05790) | mvaD | 1157964..1158908 (+) | 945 | WP_003099837.1 | diphosphomevalonate decarboxylase | - |
| Q9318_RS05795 (Q9318_05795) | - | 1158901..1159920 (+) | 1020 | WP_003099834.1 | phosphomevalonate kinase | - |
| Q9318_RS05800 (Q9318_05800) | fni | 1159901..1160896 (+) | 996 | WP_003099830.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| Q9318_RS05805 (Q9318_05805) | - | 1160920..1162197 (-) | 1278 | WP_003099827.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| Q9318_RS05810 (Q9318_05810) | - | 1162187..1163359 (-) | 1173 | WP_003099823.1 | hydroxymethylglutaryl-CoA synthase | - |
| Q9318_RS05815 (Q9318_05815) | - | 1163555..1164394 (+) | 840 | WP_017794807.1 | thymidylate synthase | - |
| Q9318_RS05820 (Q9318_05820) | - | 1164473..1164970 (+) | 498 | WP_003099817.1 | dihydrofolate reductase | - |
| Q9318_RS05825 (Q9318_05825) | clpX | 1165195..1166424 (+) | 1230 | WP_306102464.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| Q9318_RS05830 (Q9318_05830) | yihA | 1166434..1167033 (+) | 600 | WP_003099810.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| Q9318_RS05835 (Q9318_05835) | - | 1167141..1167854 (+) | 714 | WP_003099809.1 | hypothetical protein | - |
| Q9318_RS05840 (Q9318_05840) | - | 1167926..1169268 (+) | 1343 | Protein_1101 | IS3 family transposase | - |
| Q9318_RS05845 (Q9318_05845) | - | 1169414..1170367 (+) | 954 | WP_003098612.1 | IS30 family transposase | - |
| Q9318_RS05850 (Q9318_05850) | rplJ | 1170631..1171131 (+) | 501 | WP_003099802.1 | 50S ribosomal protein L10 | - |
| Q9318_RS05855 (Q9318_05855) | rplL | 1171195..1171560 (+) | 366 | WP_003099800.1 | 50S ribosomal protein L7/L12 | - |
| Q9318_RS05860 (Q9318_05860) | tnpA | 1171783..1172223 (+) | 441 | WP_003099798.1 | IS200/IS605 family transposase | - |
| Q9318_RS05865 (Q9318_05865) | - | 1172291..1173396 (+) | 1106 | WP_089180059.1 | IS3 family transposase | - |
| Q9318_RS05870 (Q9318_05870) | - | 1173741..1174916 (-) | 1176 | WP_003099056.1 | IS256 family transposase | - |
| Q9318_RS05875 (Q9318_05875) | - | 1175176..1176096 (-) | 921 | WP_003099793.1 | polysaccharide deacetylase family protein | - |
| Q9318_RS05880 (Q9318_05880) | - | 1176281..1177567 (+) | 1287 | WP_003099788.1 | homoserine dehydrogenase | - |
| Q9318_RS05885 (Q9318_05885) | thrB | 1177569..1178429 (+) | 861 | WP_003099786.1 | homoserine kinase | - |
| Q9318_RS05890 (Q9318_05890) | - | 1178513..1179772 (+) | 1260 | WP_003099784.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| Q9318_RS05895 (Q9318_05895) | folE | 1179801..1180364 (+) | 564 | WP_003099782.1 | GTP cyclohydrolase I FolE | - |
| Q9318_RS05900 (Q9318_05900) | folP | 1180374..1181174 (+) | 801 | WP_003099781.1 | dihydropteroate synthase | - |
| Q9318_RS05905 (Q9318_05905) | folB | 1181181..1181540 (+) | 360 | WP_003099779.1 | dihydroneopterin aldolase | - |
| Q9318_RS05910 (Q9318_05910) | folK | 1181537..1182028 (+) | 492 | WP_003099778.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| Q9318_RS05915 (Q9318_05915) | - | 1182280..1183446 (-) | 1167 | WP_003099776.1 | IS30 family transposase | - |
| Q9318_RS05920 (Q9318_05920) | murB | 1183701..1184594 (+) | 894 | WP_003099774.1 | UDP-N-acetylmuramate dehydrogenase | - |
| Q9318_RS05925 (Q9318_05925) | - | 1184629..1185783 (+) | 1155 | WP_003099772.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45165.80 Da Isoelectric Point: 4.4847
>NTDB_id=867847 Q9318_RS05825 WP_306102464.1 1165195..1166424(+) (clpX) [Streptococcus iniae strain BH16-24]
MAVNRTNDIKVHCSFCGKDQDEVKKIIAGNNVFICDECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVVGQDH
AKKALAVALYNHYKRVSFTESRDEDEVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLTVADLIQI
LTEPRNALVKQYQALLSYDGVELEFEKAALEAIAAKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKDSVDG
LKKPILETA
MAVNRTNDIKVHCSFCGKDQDEVKKIIAGNNVFICDECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVVGQDH
AKKALAVALYNHYKRVSFTESRDEDEVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLTVADLIQI
LTEPRNALVKQYQALLSYDGVELEFEKAALEAIAAKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKDSVDG
LKKPILETA
Nucleotide
Download Length: 1230 bp
>NTDB_id=867847 Q9318_RS05825 WP_306102464.1 1165195..1166424(+) (clpX) [Streptococcus iniae strain BH16-24]
ATGGCAGTTAATCGTACAAACGATATTAAGGTCCATTGTTCATTTTGTGGCAAGGACCAAGATGAAGTTAAAAAAATTAT
TGCAGGGAACAATGTTTTCATCTGTGATGAATGTGTTGCATTATCTCAAGAAATTATAAAAGAAGAATTAGCAGAGGAAG
TATTAGCTGATTTAACGGAAGTTCCAAAACCAAAAGAACTTTTAGATATTTTAAATCAATATGTTGTTGGTCAAGACCAT
GCTAAAAAGGCTTTAGCAGTAGCACTTTATAACCATTATAAGCGTGTTTCGTTTACAGAAAGTCGCGATGAAGATGAAGT
GGAATTGCAAAAGTCAAATATTCTCATGATTGGCCCAACTGGTTCAGGAAAAACCTTCTTGGCACAAACTTTGGCAAAAA
GTTTAAATGTACCATTTGCCATTGCGGATGCTACTTCATTAACTGAAGCTGGCTATGTCGGCGAAGATGTTGAGAATATT
CTGCTAAAATTAATTCAAGCAGCTGATTATAATGTAGAACGTGCAGAACGTGGCATTATTTATGTTGATGAAATTGATAA
AATTGCTAAAAAAGGGGAAAATGTTTCCATTACACGCGATGTCTCTGGTGAAGGTGTTCAACAAGCCCTGCTAAAAATTA
TTGAAGGCACAGAAGCAAGTGTTCCACCTCAAGGTGGACGTAAACACCCTAATCAAGAGATGATTCAAATTGATACGAAA
AATATTTTGTTCATCGTTGGTGGCGCTTTTGATGGCATTGAAGAAATTGTTAAACAGCGTCTTGGAGAAAAAATTATTGG
TTTTGGCCAAAATAGCCGTAAAATTGATGAAGATGCTTCATATATGCAAGAAATTATCGCAGAAGACATTCAAAAATTTG
GCCTTATTCCAGAATTTATTGGACGCTTACCTGTTGTTGCAGCCTTAGAACAGTTAACAGTTGCTGACCTGATTCAAATT
TTAACAGAACCAAGAAATGCTCTTGTTAAACAATACCAAGCTCTTTTATCTTATGATGGTGTTGAACTTGAATTTGAAAA
GGCTGCTTTGGAAGCTATTGCTGCAAAAGCTATAGAACGTAAAACTGGTGCGCGTGGCCTTCGTTCAATCATTGAAGAAA
CCATGCTTGACATTATGTTTGAAATCCCTAGTCAAGAAGATGTTATTAAGGTTCGCATTACTAAGGACTCTGTGGATGGG
CTTAAAAAACCTATTTTGGAAACGGCATAA
ATGGCAGTTAATCGTACAAACGATATTAAGGTCCATTGTTCATTTTGTGGCAAGGACCAAGATGAAGTTAAAAAAATTAT
TGCAGGGAACAATGTTTTCATCTGTGATGAATGTGTTGCATTATCTCAAGAAATTATAAAAGAAGAATTAGCAGAGGAAG
TATTAGCTGATTTAACGGAAGTTCCAAAACCAAAAGAACTTTTAGATATTTTAAATCAATATGTTGTTGGTCAAGACCAT
GCTAAAAAGGCTTTAGCAGTAGCACTTTATAACCATTATAAGCGTGTTTCGTTTACAGAAAGTCGCGATGAAGATGAAGT
GGAATTGCAAAAGTCAAATATTCTCATGATTGGCCCAACTGGTTCAGGAAAAACCTTCTTGGCACAAACTTTGGCAAAAA
GTTTAAATGTACCATTTGCCATTGCGGATGCTACTTCATTAACTGAAGCTGGCTATGTCGGCGAAGATGTTGAGAATATT
CTGCTAAAATTAATTCAAGCAGCTGATTATAATGTAGAACGTGCAGAACGTGGCATTATTTATGTTGATGAAATTGATAA
AATTGCTAAAAAAGGGGAAAATGTTTCCATTACACGCGATGTCTCTGGTGAAGGTGTTCAACAAGCCCTGCTAAAAATTA
TTGAAGGCACAGAAGCAAGTGTTCCACCTCAAGGTGGACGTAAACACCCTAATCAAGAGATGATTCAAATTGATACGAAA
AATATTTTGTTCATCGTTGGTGGCGCTTTTGATGGCATTGAAGAAATTGTTAAACAGCGTCTTGGAGAAAAAATTATTGG
TTTTGGCCAAAATAGCCGTAAAATTGATGAAGATGCTTCATATATGCAAGAAATTATCGCAGAAGACATTCAAAAATTTG
GCCTTATTCCAGAATTTATTGGACGCTTACCTGTTGTTGCAGCCTTAGAACAGTTAACAGTTGCTGACCTGATTCAAATT
TTAACAGAACCAAGAAATGCTCTTGTTAAACAATACCAAGCTCTTTTATCTTATGATGGTGTTGAACTTGAATTTGAAAA
GGCTGCTTTGGAAGCTATTGCTGCAAAAGCTATAGAACGTAAAACTGGTGCGCGTGGCCTTCGTTCAATCATTGAAGAAA
CCATGCTTGACATTATGTTTGAAATCCCTAGTCAAGAAGATGTTATTAAGGTTCGCATTACTAAGGACTCTGTGGATGGG
CTTAAAAAACCTATTTTGGAAACGGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
87.531 |
100 |
0.875 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
57.644 |
97.555 |
0.562 |