Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP58_RS01615 Genome accession   NZ_CP148206
Coordinates   306641..307189 (-) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 301641..312189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP58_RS01585 (WHP58_01585) ctsT 301691..301993 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  WHP58_RS01590 (WHP58_01590) proC 301990..302721 (-) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP58_RS01595 (WHP58_01595) fliW 302721..303110 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP58_RS01600 (WHP58_01600) - 303271..303918 (+) 648 WP_052823130.1 outer membrane protein assembly factor BamD -
  WHP58_RS01605 (WHP58_01605) lon 303935..306310 (+) 2376 WP_002853487.1 endopeptidase La -
  WHP58_RS01610 (WHP58_01610) rpsR 306370..306630 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP58_RS01615 (WHP58_01615) ssb 306641..307189 (-) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  WHP58_RS01620 (WHP58_01620) rpsF 307201..307575 (-) 375 WP_002890070.1 30S ribosomal protein S6 -
  WHP58_RS01625 (WHP58_01625) - 307662..308528 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP58_RS01630 (WHP58_01630) rseP 308521..309627 (-) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHP58_RS01635 (WHP58_01635) pgsA 309624..310160 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP58_RS01640 (WHP58_01640) rdxA 310285..310890 (-) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP58_RS01645 (WHP58_01645) - 310890..311510 (-) 621 WP_338906891.1 nitroreductase family protein -
  WHP58_RS01650 (WHP58_01650) - 311574..311999 (-) 426 WP_052823132.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=867780 WHP58_RS01615 WP_002890071.1 306641..307189(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0066]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=867780 WHP58_RS01615 WP_002890071.1 306641..307189(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0066]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363