Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Q9256_RS16990 Genome accession   NZ_CP132214
Coordinates   3504572..3505390 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2022CK-00066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499572..3510390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9256_RS16975 (Q9256_16975) pilE 3499789..3500214 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  Q9256_RS16980 (Q9256_16980) pilY2 3500211..3500693 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  Q9256_RS16985 (Q9256_16985) pilY1 3500706..3504560 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  Q9256_RS16990 (Q9256_16990) pilX 3504572..3505390 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q9256_RS16995 (Q9256_16995) pilW 3505387..3506388 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  Q9256_RS17000 (Q9256_17000) pilV 3506389..3506949 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  Q9256_RS17005 (Q9256_17005) fimU 3506943..3507416 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q9256_RS17010 (Q9256_17010) ispH 3507586..3508536 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q9256_RS17015 (Q9256_17015) gmk 3508659..3509288 (+) 630 WP_000015937.1 guanylate kinase -
  Q9256_RS17020 (Q9256_17020) rpoZ 3509361..3509639 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Q9256_RS17025 (Q9256_17025) - 3509678..3509807 (+) 130 Protein_3330 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=867696 Q9256_RS16990 WP_000149374.1 3504572..3505390(-) (pilX) [Acinetobacter baumannii strain 2022CK-00066]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=867696 Q9256_RS16990 WP_000149374.1 3504572..3505390(-) (pilX) [Acinetobacter baumannii strain 2022CK-00066]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993