Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABJ68_RS05430 Genome accession   NZ_AP027515
Coordinates   1107233..1107970 (-) Length   245 a.a.
NCBI ID   WP_149509016.1    Uniprot ID   -
Organism   Escherichia coli strain LR-29-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102233..1112970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ68_RS05400 (VEE08_10340) yfiL 1102391..1102756 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AABJ68_RS05405 (VEE08_10350) aroF 1102966..1104036 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABJ68_RS05410 (VEE08_10360) tyrA 1104047..1105168 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABJ68_RS05415 (VEE08_10370) pheA 1105211..1106371 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABJ68_RS05420 pheL 1106470..1106517 (-) 48 WP_010723158.1 phe operon leader peptide -
  AABJ68_RS05425 (VEE08_10380) raiA 1106621..1106962 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABJ68_RS05430 (VEE08_10390) comL 1107233..1107970 (-) 738 WP_149509016.1 outer membrane protein assembly factor BamD Machinery gene
  AABJ68_RS05435 (VEE08_10400) rluD 1108105..1109085 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABJ68_RS05440 (VEE08_10410) yfiH 1109082..1109813 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AABJ68_RS05445 (VEE08_10420) clpC 1109943..1112516 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27845.40 Da        Isoelectric Point: 6.4874

>NTDB_id=86768 AABJ68_RS05430 WP_149509016.1 1107233..1107970(-) (comL) [Escherichia coli strain LR-29-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAS
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=86768 AABJ68_RS05430 WP_149509016.1 1107233..1107970(-) (comL) [Escherichia coli strain LR-29-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCTCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment