Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   Q9L40_RS09205 Genome accession   NZ_CP132190
Coordinates   904350..904961 (+) Length   203 a.a.
NCBI ID   WP_000340100.1    Uniprot ID   Q4F6W7
Organism   Vibrio cholerae strain DRC187     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 899350..909961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS09185 (Q9L40_09185) - 899685..900602 (-) 918 WP_113600608.1 ABC transporter ATP-binding protein -
  Q9L40_RS09190 (Q9L40_09190) - 900983..902629 (-) 1647 WP_029627919.1 SulP family inorganic anion transporter -
  Q9L40_RS09195 (Q9L40_09195) can 902777..903445 (+) 669 WP_001114112.1 carbonate dehydratase -
  Q9L40_RS09200 (Q9L40_09200) hpt 903521..904054 (-) 534 WP_029627918.1 hypoxanthine phosphoribosyltransferase -
  Q9L40_RS09205 (Q9L40_09205) hapR 904350..904961 (+) 612 WP_000340100.1 quorum-sensing master transcriptional regulator HapR Regulator
  Q9L40_RS09210 (Q9L40_09210) rsmI 905171..906037 (-) 867 WP_305799200.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  Q9L40_RS09215 (Q9L40_09215) - 906107..907912 (+) 1806 WP_057642140.1 penicillin-binding protein activator -
  Q9L40_RS09220 (Q9L40_09220) - 907899..908267 (+) 369 WP_032471957.1 YraN family protein -
  Q9L40_RS09225 (Q9L40_09225) - 908271..908861 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  Q9L40_RS09230 (Q9L40_09230) - 908864..909433 (+) 570 WP_000789633.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23720.44 Da        Isoelectric Point: 6.6356

>NTDB_id=867499 Q9L40_RS09205 WP_000340100.1 904350..904961(+) (hapR) [Vibrio cholerae strain DRC187]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=867499 Q9L40_RS09205 WP_000340100.1 904350..904961(+) (hapR) [Vibrio cholerae strain DRC187]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTGTCGCCTCAAAAACGTAAACTACAACTGATGGAAATCGCATT
GGAAGTATTTGCTAAACGTGGCATTGGTCGCGGTGGTCACGCTGATATTGCAGAGATTGCGCAAGTCTCCGTAGCAACCG
TGTTCAACTACTTCCCAACTCGCGAAGATCTCGTCGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACCCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
TGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTATCCACCA
ACCGTACGAACCAACTGCTGATCAGAAATATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GACAACATGGCTAGCCTATTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCGGT
GTATAAGCTGGTCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4F6W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.507

100

0.995
  hapR Vibrio cholerae strain A1552

99.507

100

0.995
  opaR Vibrio parahaemolyticus RIMD 2210633

72.727

97.537

0.709