Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Q9L40_RS07100 Genome accession   NZ_CP132190
Coordinates   424116..425483 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain DRC187     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 419116..430483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS07065 (Q9L40_07065) moaE 419829..420290 (-) 462 WP_113612357.1 molybdopterin synthase catalytic subunit MoaE -
  Q9L40_RS07070 (Q9L40_07070) moaD 420292..420537 (-) 246 WP_113609985.1 molybdopterin synthase sulfur carrier subunit -
  Q9L40_RS07075 (Q9L40_07075) moaC 420534..421013 (-) 480 WP_000080905.1 cyclic pyranopterin monophosphate synthase MoaC -
  Q9L40_RS07080 (Q9L40_07080) moaB 421024..421536 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  Q9L40_RS07085 (Q9L40_07085) moaA 421596..422585 (-) 990 WP_305799322.1 GTP 3',8-cyclase MoaA -
  Q9L40_RS07090 (Q9L40_07090) - 422892..423782 (+) 891 WP_000061067.1 YvcK family protein -
  Q9L40_RS07095 (Q9L40_07095) luxU 423771..424112 (-) 342 WP_057643958.1 quorum-sensing phosphorelay protein LuxU -
  Q9L40_RS07100 (Q9L40_07100) luxO 424116..425483 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Q9L40_RS07105 (Q9L40_07105) uvrB 425914..427944 (-) 2031 WP_305799321.1 excinuclease ABC subunit UvrB -
  Q9L40_RS07115 (Q9L40_07115) rsxA 428826..429407 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  Q9L40_RS07120 (Q9L40_07120) rsxB 429407..429994 (+) 588 WP_000104484.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=867495 Q9L40_RS07100 WP_001888250.1 424116..425483(-) (luxO) [Vibrio cholerae strain DRC187]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=867495 Q9L40_RS07100 WP_001888250.1 424116..425483(-) (luxO) [Vibrio cholerae strain DRC187]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCCGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGCGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCATGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTCTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGAACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
CTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGTTTTCGTGAAGACTTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGCGGAGATGATGTGATCGAGATTGCTTACTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAACGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTATGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCCCGCGCCGC
GACCTATCTGGATGTCAGCCCATCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38