Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Q9L40_RS02650 Genome accession   NZ_CP132189
Coordinates   491156..492325 (-) Length   389 a.a.
NCBI ID   WP_001039919.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 486156..497325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS02645 (Q9L40_02645) cqsS 488994..491054 (+) 2061 WP_305799646.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  Q9L40_RS02650 (Q9L40_02650) cqsA 491156..492325 (-) 1170 WP_001039919.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Q9L40_RS02655 (Q9L40_02655) - 492522..493484 (-) 963 WP_305799647.1 TDT family transporter -
  Q9L40_RS02660 (Q9L40_02660) clcA 493630..495036 (-) 1407 WP_305799648.1 H(+)/Cl(-) exchange transporter ClcA -
  Q9L40_RS02665 (Q9L40_02665) - 495502..496491 (+) 990 WP_305799649.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43528.64 Da        Isoelectric Point: 6.4943

>NTDB_id=867484 Q9L40_RS02650 WP_001039919.1 491156..492325(-) (cqsA) [Vibrio cholerae strain DRC187]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKLTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIKSADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQITKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=867484 Q9L40_RS02650 WP_001039919.1 491156..492325(-) (cqsA) [Vibrio cholerae strain DRC187]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTAGCTAAGCTCACAGGCTTTGATGAATGCCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCGCTGGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGTACACATGGTCCTAATG
GTGCAGGCTTACTGGCAGAATTAGGCCTTACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACCACATTAGAGATTATTAAGTCTGCGGATAATCGGCGTCAGCATTTAG
ATCGTATGGCGAGAAAATTACGCATAGGATTATCCCAGTTGGGATTAACCATTCGAAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCGAAGAATAAAAACATTATTCGTTTATCACTCAATAGTGATGTGAACGATGAACAAATCACCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGTGGTGATTTTTATTTCCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

98.972

100

0.99