Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   Q9L40_RS02645 Genome accession   NZ_CP132189
Coordinates   488994..491054 (+) Length   686 a.a.
NCBI ID   WP_305799646.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 483994..496054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS02635 (Q9L40_02635) - 484713..485852 (+) 1140 WP_305799644.1 exonuclease SbcCD subunit D -
  Q9L40_RS02640 (Q9L40_02640) - 485854..488895 (+) 3042 WP_305799645.1 SMC family ATPase -
  Q9L40_RS02645 (Q9L40_02645) cqsS 488994..491054 (+) 2061 WP_305799646.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  Q9L40_RS02650 (Q9L40_02650) cqsA 491156..492325 (-) 1170 WP_001039919.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Q9L40_RS02655 (Q9L40_02655) - 492522..493484 (-) 963 WP_305799647.1 TDT family transporter -
  Q9L40_RS02660 (Q9L40_02660) clcA 493630..495036 (-) 1407 WP_305799648.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78102.02 Da        Isoelectric Point: 5.5088

>NTDB_id=867483 Q9L40_RS02645 WP_305799646.1 488994..491054(+) (cqsS) [Vibrio cholerae strain DRC187]
MIVSMDVIKRVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQSYENLGLRCAAAVLFGGLVFRDSMPKKWQRYMPGYFL
FTIGFCLPFFFAFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLMAYLAVYGLTDFHPTTLIEWQYIPIF
LFTYVFGNLCFFRNQVSHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQAAAHADYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQQSVQLEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIAQTGEDNIIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCTS
QQGQWTEFVLTFPRYDSDTVNEIKAELLKTKSIIYIGSNQAIVRELTQLAVEDEFGFTAISAQQAVRRQDYEFEFELILL
DLDDATAQGELLPKLEGTLSFAGGCIGYVYDPGKTYAVNINRYLRIQPISIHSILRKPKTIIERLLFEQESLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHVY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=867483 Q9L40_RS02645 WP_305799646.1 488994..491054(+) (cqsS) [Vibrio cholerae strain DRC187]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCTAATCTGTCCTTAGTCGGATGGATGGGCAT
GCTTGGCTTTCCTGCCTACTACTTCATCTGGGAATATTGGTTTCCGCAATCTTACGAAAATTTAGGGCTGCGTTGTGCGG
CAGCGGTGCTGTTCGGTGGGCTGGTGTTTCGTGATTCGATGCCTAAGAAATGGCAGCGGTATATGCCGGGCTATTTTTTA
TTCACCATAGGTTTCTGCTTACCCTTTTTCTTCGCTTTTATGATGTTAATGAATGACTGGTCGACGATTTGGGCGATGTC
GTTTATGGCGTCCATTTTCCTGCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCTCTTTTCTCAGTGT
TGATGGCTTATCTCGCCGTATATGGGTTGACGGATTTTCATCCTACCACTTTGATTGAATGGCAATATATACCGATTTTT
TTGTTCACTTATGTGTTTGGAAATTTGTGTTTTTTCCGTAACCAAGTCTCGCATGAAACCAAAGTGTCGATTGCTAAAAC
ATTCGGAGCAGGGATTGCCCACGAAATGCGTAATCCGCTCAGTGCGTTGAAAACGTCGATTGATGTTGTGCGGACTATGA
TCCCTAAACCGCAAGCTGCGGCACATGCGGATTATTCCTTGGATGCACAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCGGATGATGTTATTTACTCTGGCAATAATGCAATTGATTTGCTTCTTACCTCGATAGATGAAAACCGTGTATCTCC
GGCGAGCTTTAAAAAACACTCAGTAGTGGATGTGATTGAAAAAGCCGTGAAAACTTTTCCGTATAAAAACGCGGCAGATC
AGCAGTCAGTACAACTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTATTGACCTATGCGCTATTTAAC
CTTTTGAAAAATGCCTTCTATTACCAGAAAGAGCATTTCTCAGTTCGTATTACAATCGCTCAAACTGGCGAGGATAATAT
TATCCGAGTTCGTGATAATGGAGTAGGCATTGCTCCAGAGATGTTGGAAGACATTTTTCGTGATTTCTATACCTTCGGTA
AAAACGGTAGCTATGGGCTAGGATTACCGTTCTGTCGTAAAGTGATGACGGCATTTGGAGGGACGATTCGCTGCACGTCT
CAACAAGGTCAATGGACCGAATTTGTATTAACCTTCCCCCGTTACGATTCCGATACGGTCAATGAGATAAAAGCAGAGCT
GCTGAAAACCAAATCGATCATTTACATCGGATCAAATCAAGCCATCGTTCGAGAGTTAACTCAGCTAGCGGTGGAAGATG
AGTTTGGCTTTACCGCTATTTCTGCACAGCAAGCGGTAAGACGCCAAGACTATGAGTTTGAATTCGAACTTATTCTGCTT
GATCTCGATGACGCTACAGCGCAGGGAGAGTTGCTGCCCAAACTCGAAGGTACATTGAGTTTTGCAGGAGGTTGTATCGG
CTATGTGTATGACCCAGGTAAAACGTATGCGGTAAACATCAATCGTTATCTGCGCATCCAACCGATCAGTATTCACTCTA
TTCTCAGAAAGCCTAAGACAATCATCGAGCGCTTGTTGTTTGAACAAGAGTCTTTATCGATGAATCGTAACGTGATCCCT
TTGCAAAAGAGTCGGCATGAACGGCGCATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCCATTTTGCT
TGAACAACAAGGCTATGAAGTGGTGCAAGCCAACGATGGGAGTGAAGTGCTCAAGCATATGGAGAGCCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCCAATGTTGGTGGATTGGAAGCGACGCGTTTAATTCGTGGCTCTGAACATGTTTAC
AAAAATATTCCGATCATCGGTTATACCGGTGATAACAGCCCCAAAACTTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTTATTGTCAAGCCAGCGGACCGTGATGTATTGCTGAATAAAGTGGCAGCTTGGGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

96.501

100

0.965