Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHQ13_RS05840 Genome accession   NZ_CP148185
Coordinates   1108869..1109417 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0087     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1103869..1114417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ13_RS05805 (WHQ13_05805) - 1104058..1104483 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  WHQ13_RS05810 (WHQ13_05810) - 1104547..1105167 (+) 621 WP_002852938.1 NAD(P)H-dependent oxidoreductase -
  WHQ13_RS05815 (WHQ13_05815) - 1105167..1105772 (+) 606 WP_002867183.1 NAD(P)H-dependent oxidoreductase -
  WHQ13_RS05820 (WHQ13_05820) pgsA 1105898..1106434 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHQ13_RS05825 (WHQ13_05825) rseP 1106431..1107537 (+) 1107 WP_002867184.1 RIP metalloprotease RseP -
  WHQ13_RS05830 (WHQ13_05830) - 1107530..1108396 (+) 867 WP_063668043.1 VirK family antimicrobial peptide resistance protein -
  WHQ13_RS05835 (WHQ13_05835) rpsF 1108483..1108860 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  WHQ13_RS05840 (WHQ13_05840) ssb 1108869..1109417 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  WHQ13_RS05845 (WHQ13_05845) rpsR 1109428..1109688 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHQ13_RS05850 (WHQ13_05850) lon 1109748..1112123 (-) 2376 WP_002853487.1 endopeptidase La -
  WHQ13_RS05855 (WHQ13_05855) - 1112140..1112787 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  WHQ13_RS05860 (WHQ13_05860) fliW 1112948..1113337 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHQ13_RS05865 (WHQ13_05865) proC 1113337..1114068 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  WHQ13_RS05870 (WHQ13_05870) ctsT 1114065..1114367 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=867368 WHQ13_RS05840 WP_002860190.1 1108869..1109417(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0087]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=867368 WHQ13_RS05840 WP_002860190.1 1108869..1109417(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0087]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363