Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   WHQ40_RS06550 Genome accession   NZ_CP148183
Coordinates   1247921..1248586 (-) Length   221 a.a.
NCBI ID   WP_052789820.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0091     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242921..1253586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ40_RS06535 (WHQ40_06535) groES 1244776..1245036 (+) 261 WP_002825273.1 co-chaperone GroES -
  WHQ40_RS06540 (WHQ40_06540) groL 1245058..1246695 (+) 1638 WP_002858047.1 chaperonin GroEL -
  WHQ40_RS06545 (WHQ40_06545) dccS 1246738..1247928 (-) 1191 WP_063668027.1 two-component system sensor histidine kinase DccS -
  WHQ40_RS06550 (WHQ40_06550) ciaR 1247921..1248586 (-) 666 WP_052789820.1 two-component system response regulator DccR Regulator
  WHQ40_RS06555 (WHQ40_06555) - 1248734..1249333 (+) 600 WP_002855731.1 bacteriohemerythrin -
  WHQ40_RS06560 (WHQ40_06560) - 1249344..1249592 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  WHQ40_RS06570 (WHQ40_06570) - 1249850..1251097 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  WHQ40_RS06575 (WHQ40_06575) - 1251094..1251768 (-) 675 WP_002853196.1 response regulator transcription factor -
  WHQ40_RS06580 (WHQ40_06580) htrA 1251844..1253262 (-) 1419 WP_002869642.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25603.30 Da        Isoelectric Point: 4.6834

>NTDB_id=867287 WHQ40_RS06550 WP_052789820.1 1247921..1248586(-) (ciaR) [Campylobacter jejuni strain Z1323CCJ0091]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=867287 WHQ40_RS06550 WP_052789820.1 1247921..1248586(-) (ciaR) [Campylobacter jejuni strain Z1323CCJ0091]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGCGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGAG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGTAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362