Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   Q7W68_RS20195 Genome accession   NZ_CP132065
Coordinates   3947099..3947893 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain PAMC 29538     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3942099..3952893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W68_RS20170 - 3942577..3944649 (-) 2073 WP_305926636.1 sigma 54-interacting transcriptional regulator -
  Q7W68_RS20175 - 3944787..3945020 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  Q7W68_RS20180 - 3945072..3945800 (-) 729 WP_002033957.1 glycerophosphodiester phosphodiesterase -
  Q7W68_RS20185 - 3945851..3945997 (+) 147 WP_001247671.1 YycC family protein -
  Q7W68_RS20190 - 3946238..3946801 (-) 564 WP_305926637.1 PRK06770 family protein -
  Q7W68_RS20195 spo0A 3947099..3947893 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  Q7W68_RS20200 spoIVB 3948180..3949472 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  Q7W68_RS20205 recN 3949592..3951331 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  Q7W68_RS20210 argR 3951602..3952051 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=867155 Q7W68_RS20195 WP_002015081.1 3947099..3947893(-) (spo0A) [Bacillus mycoides strain PAMC 29538]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=867155 Q7W68_RS20195 WP_002015081.1 3947099..3947893(-) (spo0A) [Bacillus mycoides strain PAMC 29538]
GTGGAAAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGATATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCGATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818