Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Q7W68_RS20555 Genome accession   NZ_CP132065
Coordinates   4000163..4001206 (-) Length   347 a.a.
NCBI ID   WP_305926649.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29538     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3995163..4006206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W68_RS20510 - 3995562..3995762 (-) 201 WP_002015009.1 YqzE family protein -
  Q7W68_RS20515 - 3995801..3996298 (-) 498 WP_002129082.1 shikimate kinase -
  Q7W68_RS20520 - 3996450..3997100 (-) 651 WP_305926647.1 2OG-Fe(II) oxygenase -
  Q7W68_RS20525 comGG 3997274..3997645 (-) 372 WP_033709423.1 competence type IV pilus minor pilin ComGG -
  Q7W68_RS20530 comGF 3997642..3998103 (-) 462 WP_002088620.1 competence type IV pilus minor pilin ComGF -
  Q7W68_RS20535 - 3998087..3998383 (-) 297 WP_016100615.1 hypothetical protein -
  Q7W68_RS20540 comGD 3998376..3998831 (-) 456 WP_002088622.1 competence type IV pilus minor pilin ComGD -
  Q7W68_RS20545 comGC 3998828..3999127 (-) 300 WP_305926648.1 competence type IV pilus major pilin ComGC -
  Q7W68_RS20550 comGB 3999139..4000176 (-) 1038 WP_002138336.1 competence type IV pilus assembly protein ComGB -
  Q7W68_RS20555 comGA 4000163..4001206 (-) 1044 WP_305926649.1 competence type IV pilus ATPase ComGA Machinery gene
  Q7W68_RS20560 - 4001413..4002108 (+) 696 WP_078172814.1 metalloregulator ArsR/SmtB family transcription factor -
  Q7W68_RS20565 - 4002238..4002480 (+) 243 WP_002015110.1 DUF2626 domain-containing protein -
  Q7W68_RS20570 - 4002587..4003981 (+) 1395 WP_305926650.1 L-cystine transporter -
  Q7W68_RS20575 - 4004062..4004454 (-) 393 WP_305926651.1 hypothetical protein -
  Q7W68_RS20580 - 4004542..4004757 (-) 216 WP_002015115.1 DUF3912 family protein -
  Q7W68_RS20585 - 4005010..4005321 (+) 312 WP_002165070.1 hypothetical protein -
  Q7W68_RS20590 - 4005357..4005845 (-) 489 WP_002015119.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39177.65 Da        Isoelectric Point: 9.1904

>NTDB_id=867157 Q7W68_RS20555 WP_305926649.1 4000163..4001206(-) (comGA) [Bacillus mycoides strain PAMC 29538]
MNSVEIFANIIMKEACGVQASDLHIVPRQKDVAIQLRIGKDLITKRCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSSAEKLLSFLKHSHGLLVFTGPTGSGKTTTMYALLEV
ARKWQTRRIITLEDPVEQRKDGLLQIQINEKAGITYKTGLKAILRHDPDIILVGEIRDEETAKVAVRASLMGHLVMTTLH
TNDAKGAILRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCATLCKSMRKVRQASIYELLYGYELKQAIKEASGEH
VTYHYKTLESSVRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=867157 Q7W68_RS20555 WP_305926649.1 4000163..4001206(-) (comGA) [Bacillus mycoides strain PAMC 29538]
ATGAATAGTGTCGAGATTTTTGCAAATATAATTATGAAAGAAGCTTGTGGGGTGCAAGCATCGGACTTACATATTGTGCC
CAGGCAGAAGGATGTGGCGATTCAATTACGTATTGGAAAAGATTTAATTACGAAACGGTGTATTGAGAAAGAATTTGGAG
AAAAGCTTGTTTCACACTTTAAATTTTTAGCATCAATGGATATAGGAGAGAGGAGAAAACCTCAAAATGGTTCGTTGTAC
TTACAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
CCATTTACAAGCATCTGTACAGCCACTGTCTCATCTTTCGTTATTTCCAAGTTCAGCGGAAAAATTACTCTCTTTTTTAA
AGCATTCTCATGGGTTACTCGTATTTACTGGGCCAACTGGTTCTGGAAAAACAACAACAATGTATGCGTTATTAGAAGTA
GCTAGAAAATGGCAAACACGTCGCATCATTACACTGGAAGATCCAGTTGAGCAAAGAAAAGACGGTTTATTACAAATTCA
AATAAATGAAAAAGCTGGTATCACATATAAAACGGGATTAAAGGCTATTTTGCGTCATGATCCAGATATTATTTTAGTTG
GCGAAATTCGTGATGAAGAAACAGCAAAAGTAGCTGTAAGGGCCAGTTTGATGGGACATTTAGTAATGACAACCTTGCAT
ACAAATGATGCGAAAGGAGCGATACTACGATTTATGGACTATGGTATTACAAGGCAAGAAATTGAACAATCATTATTAGC
AGTAGCTGCTCAGCGGCTCGTCGAATTAAAATGTCCATTTTGCAGAGGGAAGTGTGCAACTTTATGTAAATCAATGAGGA
AAGTGAGACAGGCAAGCATTTATGAACTGTTATATGGATATGAATTAAAACAAGCGATTAAAGAAGCAAGTGGAGAACAT
GTTACGTATCACTATAAAACGTTGGAATCGTCGGTTCGAAAAGGGTATGCTTTAGGCTTTTTAGAAGAAGATGTATATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.061

100

0.571