Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q8W18_RS11265 Genome accession   NZ_CP132058
Coordinates   2220265..2222001 (-) Length   578 a.a.
NCBI ID   WP_306010858.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2215265..2227001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS11250 (Q8W18_11250) - 2216143..2217243 (-) 1101 WP_058014715.1 Rap family tetratricopeptide repeat protein -
  Q8W18_RS11255 (Q8W18_11255) spo0A 2217700..2218503 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  Q8W18_RS11260 (Q8W18_11260) spoIVB 2218789..2220066 (-) 1278 WP_306010857.1 SpoIVB peptidase -
  Q8W18_RS11265 (Q8W18_11265) recN 2220265..2222001 (-) 1737 WP_306010858.1 DNA repair protein RecN Machinery gene
  Q8W18_RS11270 (Q8W18_11270) ahrC 2222035..2222484 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  Q8W18_RS11275 (Q8W18_11275) - 2222644..2223498 (-) 855 WP_169057016.1 TlyA family RNA methyltransferase -
  Q8W18_RS11280 (Q8W18_11280) dxs 2223495..2225396 (-) 1902 WP_061408514.1 1-deoxy-D-xylulose-5-phosphate synthase -
  Q8W18_RS11285 (Q8W18_11285) - 2225547..2226443 (-) 897 WP_199800955.1 polyprenyl synthetase family protein -
  Q8W18_RS11290 (Q8W18_11290) - 2226427..2226687 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64847.64 Da        Isoelectric Point: 4.8522

>NTDB_id=867051 Q8W18_RS11265 WP_306010858.1 2220265..2222001(-) (recN) [Bacillus pumilus strain F12-21]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEHGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAHLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTNVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=867051 Q8W18_RS11265 WP_306010858.1 2220265..2222001(-) (recN) [Bacillus pumilus strain F12-21]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCATGGAATTGACGCAACTGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAAAT
GGTGCACCGATTAGATTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACACTTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATTAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATTAACGACGATCTAAAAAA
GCTTTCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTTCAAATGCGAAGCATGCTGGATCAATTAG
AGTTTGACCCAGCACGCCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAGCGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCATCTGCAGAC
ACTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACATTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGGAAAAACGGAATTGA
CCAAGCTCAATTTGTGATTTCGACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCTTCTGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAGGTCACTTCCATTATTTTCGATGAGGTGGATACA
GGCGTAAGCGGCAGAGTTGCACAGGCAATTGCCGAAAAAATTTATAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCACAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCGAAACGCTCTAAAGCTGGTAGAACACTGACAA
ACGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTCGAAGTCACTGAGCTGACA
AAACAGCATGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.913

100

0.749