Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   Q8W18_RS11255 Genome accession   NZ_CP132058
Coordinates   2217700..2218503 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain F12-21     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212700..2223503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS11240 (Q8W18_11240) - 2214909..2215145 (+) 237 WP_169057019.1 DUF2627 domain-containing protein -
  Q8W18_RS11245 (Q8W18_11245) - 2215180..2215917 (-) 738 WP_169057018.1 glycerophosphodiester phosphodiesterase -
  Q8W18_RS11250 (Q8W18_11250) - 2216143..2217243 (-) 1101 WP_058014715.1 Rap family tetratricopeptide repeat protein -
  Q8W18_RS11255 (Q8W18_11255) spo0A 2217700..2218503 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  Q8W18_RS11260 (Q8W18_11260) spoIVB 2218789..2220066 (-) 1278 WP_306010857.1 SpoIVB peptidase -
  Q8W18_RS11265 (Q8W18_11265) recN 2220265..2222001 (-) 1737 WP_306010858.1 DNA repair protein RecN Machinery gene
  Q8W18_RS11270 (Q8W18_11270) ahrC 2222035..2222484 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  Q8W18_RS11275 (Q8W18_11275) - 2222644..2223498 (-) 855 WP_169057016.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=867050 Q8W18_RS11255 WP_012010520.1 2217700..2218503(-) (spo0A) [Bacillus pumilus strain F12-21]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=867050 Q8W18_RS11255 WP_012010520.1 2217700..2218503(-) (spo0A) [Bacillus pumilus strain F12-21]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCGAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGGCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTTCTTCGAAATAAACCTGAACCGAAGCGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGTGTACCTGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCTATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACTGCAAGCAGGGTAGAAC
GAGCAATTCGTCATGCGATTGAAGTTGCTTGGAGTAGAGGAAACATCGACTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATTGCAATGGTGGCTGACCGTCTGCGCTTGGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888