Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q8W18_RS08105 Genome accession   NZ_CP132058
Coordinates   1606775..1607677 (+) Length   300 a.a.
NCBI ID   WP_306012132.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1601775..1612677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS08085 (Q8W18_08085) - 1602441..1604177 (+) 1737 WP_306012131.1 glycosyltransferase -
  Q8W18_RS08090 (Q8W18_08090) - 1604174..1604449 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  Q8W18_RS08095 (Q8W18_08095) sucC 1604626..1605786 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  Q8W18_RS08100 (Q8W18_08100) sucD 1605809..1606711 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  Q8W18_RS08105 (Q8W18_08105) dprA 1606775..1607677 (+) 903 WP_306012132.1 DNA-processing protein DprA Machinery gene
  Q8W18_RS08110 (Q8W18_08110) topA 1607871..1609946 (+) 2076 WP_058014000.1 type I DNA topoisomerase -
  Q8W18_RS08115 (Q8W18_08115) trmFO 1610017..1611321 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q8W18_RS08120 (Q8W18_08120) xerC 1611384..1612301 (+) 918 WP_169056510.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34060.39 Da        Isoelectric Point: 8.5828

>NTDB_id=867044 Q8W18_RS08105 WP_306012132.1 1606775..1607677(+) (dprA) [Bacillus pumilus strain F12-21]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQYIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGIAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPAKLIQQGAKLVHSTKDILEEFSFRGVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=867044 Q8W18_RS08105 WP_306012132.1 1606775..1607677(+) (dprA) [Bacillus pumilus strain F12-21]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAATACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGAATTGCACAT
AAAGAATGCATTAGGAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGCTTAATTAGTGCGCTAACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACTGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAAACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCGGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.236

96

0.377
  dprA/cilB/dalA Streptococcus mitis SK321

47.162

76.333

0.36