Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   Q8W18_RS05910 Genome accession   NZ_CP132058
Coordinates   1191609..1191806 (+) Length   65 a.a.
NCBI ID   WP_169056285.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186609..1196806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS05880 (Q8W18_05880) - 1187019..1187198 (+) 180 WP_003211282.1 YjzC family protein -
  Q8W18_RS05885 (Q8W18_05885) - 1187368..1188633 (+) 1266 WP_306011990.1 MFS transporter -
  Q8W18_RS05890 (Q8W18_05890) - 1188748..1188942 (-) 195 WP_003211779.1 YjzD family protein -
  Q8W18_RS05895 (Q8W18_05895) - 1189154..1189894 (+) 741 WP_169056282.1 hypothetical protein -
  Q8W18_RS05900 (Q8W18_05900) - 1189970..1190545 (+) 576 WP_306011991.1 nad binding enzyme -
  Q8W18_RS05905 (Q8W18_05905) med 1190636..1191598 (+) 963 WP_306011992.1 BMP family ABC transporter substrate-binding protein Regulator
  Q8W18_RS05910 (Q8W18_05910) comZ 1191609..1191806 (+) 198 WP_169056285.1 ComZ family protein Regulator
  Q8W18_RS05915 (Q8W18_05915) - 1191817..1192050 (-) 234 WP_058014311.1 hypothetical protein -
  Q8W18_RS05920 (Q8W18_05920) - 1192220..1193158 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  Q8W18_RS05925 (Q8W18_05925) fabF 1193180..1194421 (+) 1242 WP_169056286.1 beta-ketoacyl-ACP synthase II -
  Q8W18_RS05930 (Q8W18_05930) - 1194498..1195301 (+) 804 WP_306011993.1 DUF2268 domain-containing protein -
  Q8W18_RS05935 (Q8W18_05935) - 1195462..1196442 (+) 981 WP_306011994.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7319.36 Da        Isoelectric Point: 4.2412

>NTDB_id=867034 Q8W18_RS05910 WP_169056285.1 1191609..1191806(+) (comZ) [Bacillus pumilus strain F12-21]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESGKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=867034 Q8W18_RS05910 WP_169056285.1 1191609..1191806(+) (comZ) [Bacillus pumilus strain F12-21]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGGAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

71.667

92.308

0.662