Detailed information NTG0867008

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QVL80_RS22730
• Genome accession: NZ_CP132048
• Coordinates: 4540300..4541100 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP-B8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4535300..4546100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVL80_RS22695	gspH	4535456..4535971 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
QVL80_RS22700	gspI	4535968..4536333 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QVL80_RS22705	gspJ	4536330..4536926 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
QVL80_RS22710	gspK	4536923..4537909 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
QVL80_RS22715	gspL	4537896..4539089 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
QVL80_RS22720	-	4539082..4539567 (+)	486	WP_004151943.1	type II secretion system protein M	-
QVL80_RS22725	-	4539557..4540303 (+)	747	WP_004145897.1	type II secretion system protein N	-
QVL80_RS22730	pilD	4540300..4541100 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
QVL80_RS22735	hrpB	4541148..4543577 (-)	2430	WP_203277094.1	ATP-dependent helicase HrpB	-
QVL80_RS22740	thpR	4543650..4544186 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QVL80_RS22745	sfsA	4544186..4544902 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QVL80_RS22750	dksA	4545065..4545520 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=867008 QVL80_RS22730 WP_002888947.1 4540300..4541100(+) (pilD) [Klebsiella pneumoniae strain CRKP-B8]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=867008 QVL80_RS22730 WP_002888947.1 4540300..4541100(+) (pilD) [Klebsiella pneumoniae strain CRKP-B8]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425