Detailed information NTG0866984

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QVL84_RS22410
• Genome accession: NZ_CP132042
• Coordinates: 4465127..4465927 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP-F1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4460127..4470927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVL84_RS22375	gspH	4460283..4460798 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
QVL84_RS22380	gspI	4460795..4461160 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QVL84_RS22385	gspJ	4461157..4461753 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
QVL84_RS22390	gspK	4461750..4462736 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
QVL84_RS22395	gspL	4462723..4463916 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
QVL84_RS22400	-	4463909..4464394 (+)	486	WP_004151943.1	type II secretion system protein M	-
QVL84_RS22405	-	4464384..4465130 (+)	747	WP_004145897.1	type II secretion system protein N	-
QVL84_RS22410	pilD	4465127..4465927 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
QVL84_RS22415	hrpB	4465975..4468404 (-)	2430	WP_203277094.1	ATP-dependent helicase HrpB	-
QVL84_RS22420	thpR	4468477..4469013 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QVL84_RS22425	sfsA	4469013..4469729 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QVL84_RS22430	dksA	4469892..4470347 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=866984 QVL84_RS22410 WP_002888947.1 4465127..4465927(+) (pilD) [Klebsiella pneumoniae strain CRKP-F1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=866984 QVL84_RS22410 WP_002888947.1 4465127..4465927(+) (pilD) [Klebsiella pneumoniae strain CRKP-F1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425