Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX49_RS00365 Genome accession   NZ_CP132038
Coordinates   79051..79620 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 74051..84620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX49_RS00325 - 74525..75133 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  QFX49_RS00330 rplL 75308..75676 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX49_RS00335 rplJ 75719..76219 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QFX49_RS00340 rplA 76491..77183 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX49_RS00345 rplK 77391..77813 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX49_RS00350 nusG 77994..78542 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX49_RS00355 secE 78555..78737 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QFX49_RS00360 rpmG 78793..78936 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX49_RS00365 sigH 79051..79620 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX49_RS00370 - 79701..80225 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX49_RS00375 rlmB 80225..80971 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX49_RS00380 - 80979..81383 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX49_RS00385 cysS 81376..82776 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QFX49_RS00390 cysE 82760..83407 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=866905 QFX49_RS00365 WP_000872873.1 79051..79620(-) (sigH) [Staphylococcus aureus strain 1.6]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=866905 QFX49_RS00365 WP_000872873.1 79051..79620(-) (sigH) [Staphylococcus aureus strain 1.6]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984